Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0750
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)                   29   4.8  
SB_40067| Best HMM Match : Nop17p (HMM E-Value=1.5e-13)                28   8.3  

>SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)
          Length = 1044

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
 Frame = -3

Query: 652 IGFSTELSYTYNTYTY-----KLR*IIIKTHNINENVFTYV*SLCIESLIFIDEYSNV-- 494
           IGF   LS T N Y+Y     +L  I+     +  N+FT     CI   + +D YS +  
Sbjct: 370 IGFYQILSGTLNAYSYIQWPDELLTIMKYADVLQLNIFTVAPIECISDKLKVDPYSGLLG 429

Query: 493 -SMTHVPMTFDI*FYMH-RKASLS 428
             M    + F   FY + RK SLS
Sbjct: 430 YVMMDCAVIFAAFFYYNVRKMSLS 453


>SB_40067| Best HMM Match : Nop17p (HMM E-Value=1.5e-13)
          Length = 287

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 307 LGNSVTSKQ*K-NFSNRFSSFGVYSIQTNKQIFPLYNISIKNS 432
           LGNS  SKQ K N     SS  V S    ++I P+YN+++KNS
Sbjct: 219 LGNS--SKQDKRNLIQEISSSAVRS----QEIVPVYNVAVKNS 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,034,744
Number of Sequences: 59808
Number of extensions: 333648
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)