Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0750
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   4.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.4  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 206 IF*VIFLHLGLHYWSFIRI 262
           +F V F+   + YWSFI I
Sbjct: 451 VFPVAFIIFNILYWSFIWI 469


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -2

Query: 464 HLILHASKGFTEFF----ILIL*RGKICLFVCIE*TPKLLNRFEKFFHCLEVTLFPSDIG 297
           H ++H    F  ++    +L+L    I L V I      L+     F+CL  T+F  DI 
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIV 137

Query: 296 YNF 288
            NF
Sbjct: 138 VNF 140


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -2

Query: 464 HLILHASKGFTEFF----ILIL*RGKICLFVCIE*TPKLLNRFEKFFHCLEVTLFPSDIG 297
           H ++H    F  ++    +L+L    I L V I      L+     F+CL  T+F  DI 
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIV 137

Query: 296 YNF 288
            NF
Sbjct: 138 VNF 140


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -2

Query: 464 HLILHASKGFTEFF----ILIL*RGKICLFVCIE*TPKLLNRFEKFFHCLEVTLFPSDIG 297
           H ++H    F  ++    +L+L    I L V I      L+     F+CL  T+F  DI 
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIV 137

Query: 296 YNF 288
            NF
Sbjct: 138 VNF 140


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 314 FPSDIGYNFFFFFEQH 267
           F  D+G N F+F   H
Sbjct: 222 FTEDVGLNHFYFMLNH 237


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 314 FPSDIGYNFFFFFEQH 267
           F  D+G N F+F   H
Sbjct: 222 FTEDVGLNHFYFMLNH 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,357
Number of Sequences: 438
Number of extensions: 3878
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)