Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0750
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48400.1 68414.m05406 F-box family protein contains F-box dom...    29   2.9  
At2g36700.1 68415.m04503 pectinesterase family protein contains ...    27   9.0  

>At1g48400.1 68414.m05406 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 513

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -3

Query: 619 NTYTYKLR*IIIKTHNINENVFTYV*SLCIESLIFIDEYSNVSMTHVPMTFDI 461
           N  +  L+ ++I THN NE ++  +      SL+++D  S VS  +  + FD+
Sbjct: 212 NVESASLKRLVIFTHNPNEMIWHELIYFEAPSLVYLDYSSYVSAKYDVVDFDL 264


>At2g36700.1 68415.m04503 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 333

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = +1

Query: 181 FRRVRD-VKNILGNFFTSWVTLLEF--YXXXXXXXXXXXXLYPMSLGNSVTSKQ*KNFS- 348
           F+RV+D +   +G+  +  + L++F  Y            L    +G S TS +  N + 
Sbjct: 52  FKRVQDAIDASIGSSQSKTLILIDFGIYRERFIVHENKNNLVVQGMGYSRTSIEWNNTTA 111

Query: 349 NRFSSFGVYSIQTNKQIFPLYNISIKNS 432
           +   +F  +S+    + F  YNIS KN+
Sbjct: 112 SSNGTFSSFSVAVFGEKFTAYNISFKNT 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,846,254
Number of Sequences: 28952
Number of extensions: 240820
Number of successful extensions: 379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)