Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0749
         (643 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico...    38   0.16 
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=...    36   1.1  
UniRef50_Q4D4F6 Cluster: Exonuclease, putative; n=2; Trypanosoma...    35   1.9  
UniRef50_Q0RDP0 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  
UniRef50_Q877L3 Cluster: Bll1694 protein; n=1; Bradyrhizobium ja...    33   4.4  

>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
           eudicotyledons|Rep: Polyprotein, putative - Solanum
           demissum (Wild potato)
          Length = 868

 Score = 38.3 bits (85), Expect = 0.16
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 202 KRCMEMVVQ-CRGXRGXPKKT*MECLNDDMIERGVNVQMTAERREWKRKI 56
           +RC  MVV+  R  RG PKK   E +  D+    +   MT +R+EW+ +I
Sbjct: 638 RRCEVMVVEGTRRGRGRPKKYWEEVIRQDLAMLHITEDMTLDRKEWRSRI 687


>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
           Papilionoideae|Rep: Reverse transcriptase family member
           - Glycine max (Soybean)
          Length = 377

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -1

Query: 193 MEMVVQCRGXRGXPKKT*MECLNDDMIERGVNVQMTAERREWKRKISCAGPT 38
           ME     RG RG PKKT  E +  D+   G++  M  +R  W++ I  A PT
Sbjct: 327 MERRQTIRG-RGRPKKTIREVIKKDLEINGLDRSMVLDRTLWRKLIHVADPT 377


>UniRef50_Q4D4F6 Cluster: Exonuclease, putative; n=2; Trypanosoma
           cruzi|Rep: Exonuclease, putative - Trypanosoma cruzi
          Length = 316

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 210 CIICHSDRGTRHARTAHGPVDRPALVRRALVTP 308
           C++CH   G RH R A  P   PAL+RR ++ P
Sbjct: 59  CLVCH---GFRHVRPAESPRIEPALLRRTILHP 88


>UniRef50_Q0RDP0 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 98

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -1

Query: 334 EHRPREQLPGVTKARRTKAGRSTGP*AVRA*RVPLSE*HMMHVTKRCMEMVVQCRGXRGX 155
           ++ PR + P  T+ R    GR   P A+R   VPL +       +RC      C   RG 
Sbjct: 25  DNTPRVRTPPATRLRSAGTGR---PLALRQALVPLGDQARRRTARRCRATPQPCAARRGI 81

Query: 154 PKKT 143
           P +T
Sbjct: 82  PART 85


>UniRef50_Q877L3 Cluster: Bll1694 protein; n=1; Bradyrhizobium
           japonicum|Rep: Bll1694 protein - Bradyrhizobium
           japonicum
          Length = 268

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 358 ALSRQMYHEHRPREQLPGVTKARRTK-AGRSTG 263
           A  RQ +H+HR R  +PG  KAR  + AG+ TG
Sbjct: 33  AARRQRWHDHRGRRPIPGRAKARSPRGAGQLTG 65


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,168,708
Number of Sequences: 1657284
Number of extensions: 13497340
Number of successful extensions: 34760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34729
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)