Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0749
         (643 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.1  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    21   6.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 572  PQEWFSKTQGSPTWARRTS 628
            P  W+S T  SP W   T+
Sbjct: 1039 PSTWWSSTTTSPWWTTTTT 1057


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 109 RGVNVQMTAERREWKRKISCAGPT*SGKVEKKKK 8
           +G++  + A  R+ +  I   GP  S  + KKK+
Sbjct: 183 QGISAPVEAHLRKGRGAIGAYGPEKSASIPKKKE 216


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 180 TTISIHLLVTCIICHSD 230
           T ++I   + CI CH D
Sbjct: 1   TAVAICFALMCIACHPD 17


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,530
Number of Sequences: 336
Number of extensions: 3181
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)