Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0749
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0289 - 11688733-11691342                                         35   0.063
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879...    29   2.4  
05_04_0439 + 21260445-21260790,21264038-21264786                       29   3.1  
10_07_0160 - 13656172-13656476,13656799-13657528                       28   7.2  
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076...    27   9.6  

>05_03_0289 - 11688733-11691342
          Length = 869

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 314 IAGGYQSPANQ-GRAIDWSMSRPRVTGASIGMTYDACD 204
           + G Y +P N  G + DW    P + GA++G+TY A D
Sbjct: 226 VGGSYVAPTNDSGLSRDWYDDTPYIYGAAVGVTYQAND 263


>09_06_0293 +
           22086359-22086496,22086604-22087213,22087407-22087938,
           22088617-22089151
          Length = 604

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 639 YSVHDVLRAQVGLPWVLENHSCGEAPTSRT*AVLLNTG 526
           YSV DV  +  G+ + + + SC E PT R    L N+G
Sbjct: 409 YSVEDVYHSSSGVTYQIHSVSCTENPTRRGGWALGNSG 446


>05_04_0439 + 21260445-21260790,21264038-21264786
          Length = 364

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 347 ADVPRTQAPRTIAGGYQSPANQGRAIDWS 261
           A VP + +  + + GY +PA  G A+ W+
Sbjct: 304 ASVPSSSSAASSSSGYGAPAEHGEAVQWT 332


>10_07_0160 - 13656172-13656476,13656799-13657528
          Length = 344

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 133 TPFMSSSVXLFXLYIALPFPYIS*SHASYVIPIEAPVTRGRLMDQSI 273
           T F+ S + L    ++LPFP     HAS V P+ A  T  R  ++ I
Sbjct: 3   TSFLFSLILLLITALSLPFPL----HASSVDPLSAGATTVRYWNRKI 45


>12_02_0513 -
           19906147-19906271,19906470-19906791,19907091-19907695,
           19908569-19908617
          Length = 366

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 296 SPANQGRAIDWSMSRPRVTGASIGMTYDACD*EMYGNGS 180
           SPA  GR+IDW + R   +  + G+  D     +  N S
Sbjct: 198 SPATVGRSIDWDLVRDNDSSKATGLGRDPLTSAIVANDS 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,079,638
Number of Sequences: 37544
Number of extensions: 409171
Number of successful extensions: 1023
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)