Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0749
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)                   31   0.60 
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_46128| Best HMM Match : VQ (HMM E-Value=4.6)                        28   5.6  
SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)                    28   7.4  

>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
          Length = 634

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 190 EMVVQCRGXRGXPKKT*MECLNDDMIERGVNVQMTAERREWKRKISCA 47
           + +++ +  RG P+K   E L +D+   G+    T +R  WK K++ A
Sbjct: 578 DFIIEGKRTRGRPRKNWHEVLREDLKLAGLTPHDTQDRVRWKLKLNHA 625


>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = +2

Query: 62  SLPFSSFSRHLNIHSSLYHIVIQTLH-SCLLRXTSSPST----LHYH 187
           S P +S S+  + H   YH  I T+H   L+R  SSPST    LH+H
Sbjct: 672 SPPSTSSSQRHHHHPYHYHSAITTIHIIILIRAPSSPSTSSSQLHHH 718


>SB_46128| Best HMM Match : VQ (HMM E-Value=4.6)
          Length = 333

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 88  SSEHSLLSLSYRHSNTPFMSSSVXLFXLYIALPFPY 195
           SS +++ + S+RH+ T   S+SV L   + ALP  Y
Sbjct: 269 SSRYNIETASFRHATTTTQSTSVTLQQPHSALPSRY 304


>SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)
          Length = 723

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 164 KRXTEEDMNGVFE*RYDRERSECSDDG*KKRMEEKD*LCRP 42
           KR   ED++   + + D +  E  D+G  ++  EKD  C+P
Sbjct: 123 KRAAAEDVSEDDDEKKDEDEDEKKDEGKDEKKHEKDCNCKP 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,218,622
Number of Sequences: 59808
Number of extensions: 453347
Number of successful extensions: 1138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)