Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0749
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29561-5|CAA82668.1|  395|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC084159-10|AAK39362.1|  310|Caenorhabditis elegans Hypothetical...    29   3.7  
L23648-3|AAN63386.1|  438|Caenorhabditis elegans Cyclin t protei...    28   6.5  
L23648-1|AAA28034.1|  468|Caenorhabditis elegans Cyclin t protei...    28   6.5  
U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.        27   8.6  
U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.        27   8.6  
AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell...    27   8.6  

>Z29561-5|CAA82668.1|  395|Caenorhabditis elegans Hypothetical
           protein R10E12.2 protein.
          Length = 395

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 468 WXFPXLCDXSLSCRIVPHRHLCSIEPLRSEK 560
           + FP +CD S S RI P  H   +  L  EK
Sbjct: 103 YGFPRICDQSPSVRIFPEEHKKIVAHLEKEK 133


>AC084159-10|AAK39362.1|  310|Caenorhabditis elegans Hypothetical
           protein Y73B3A.5 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +1

Query: 1   TNSSSFSPPYP-TRWGRH----S*SFSSILFFQPSSEHSLLSLSYRHSNTPFMSSSVXLF 165
           T  S+ +PP P T+ G      + + +S    QPS    LL L   H N+P   + +   
Sbjct: 168 TTPSTTAPPQPPTKKGMKPNPLNLTATSNFSLQPSISSPLLMLQQHHQNSPLFQAQISQL 227

Query: 166 XLYIAL 183
             Y AL
Sbjct: 228 YTYAAL 233


>L23648-3|AAN63386.1|  438|Caenorhabditis elegans Cyclin t protein
           1.1, isoform b protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 352 SRQMYHEHRPREQLPGVTKARRTKAGRSTGP 260
           S+  + EHRP  + P V K  RT+  RS  P
Sbjct: 276 SKFNFREHRPMLENPDVRKLDRTRDARSHSP 306


>L23648-1|AAA28034.1|  468|Caenorhabditis elegans Cyclin t protein
           1.1, isoform a protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 352 SRQMYHEHRPREQLPGVTKARRTKAGRSTGP 260
           S+  + EHRP  + P V K  RT+  RS  P
Sbjct: 276 SKFNFREHRPMLENPDVRKLDRTRDARSHSP 306


>U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +1

Query: 1   TNSSSFSPPYP----TRWGRH----S*SFSSILFFQPSSEHSLLSLSYRHSNTPFMSSSV 156
           T SS+ +PP P    T+ G      + + +S    QPS    LL L   H N+P   + +
Sbjct: 263 TTSSTTAPPPPPQPPTKKGMKPNPLNLTATSNFSLQPSISSPLLMLQQHHQNSPLFQAQI 322

Query: 157 XLFXLYIAL 183
                Y AL
Sbjct: 323 SQLYTYAAL 331


>U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +1

Query: 1   TNSSSFSPPYP----TRWGRH----S*SFSSILFFQPSSEHSLLSLSYRHSNTPFMSSSV 156
           T SS+ +PP P    T+ G      + + +S    QPS    LL L   H N+P   + +
Sbjct: 263 TTSSTTAPPPPPQPPTKKGMKPNPLNLTATSNFSLQPSISSPLLMLQQHHQNSPLFQAQI 322

Query: 157 XLFXLYIAL 183
                Y AL
Sbjct: 323 SQLYTYAAL 331


>AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell
           lineage protein 1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +1

Query: 1   TNSSSFSPPYP----TRWGRH----S*SFSSILFFQPSSEHSLLSLSYRHSNTPFMSSSV 156
           T SS+ +PP P    T+ G      + + +S    QPS    LL L   H N+P   + +
Sbjct: 263 TTSSTTAPPPPPQPPTKKGMKPNPLNLTATSNFSLQPSISSPLLMLQQHHQNSPLFQAQI 322

Query: 157 XLFXLYIAL 183
                Y AL
Sbjct: 323 SQLYTYAAL 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,028
Number of Sequences: 27780
Number of extensions: 329757
Number of successful extensions: 789
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)