Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0749
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.8  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   5.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 237  TRHARTAHGPVDRPALVRRA 296
            T H RTAHG +D   L R A
Sbjct: 1438 TLHYRTAHGNLDELQLSRHA 1457


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 237  TRHARTAHGPVDRPALVRRA 296
            T H RTAHG +D   L R A
Sbjct: 1434 TLHYRTAHGNLDELQLSRHA 1453


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +3

Query: 516 PHRHLCS-IEPLRSEKLGPRRKSGFLRPRVAPPGHVEHH 629
           PH+H  S   P R      +  +  + P + PP H  HH
Sbjct: 318 PHQHHPSQYHPHRGSSPHHQHGNHTMGPTMGPPHHHHHH 356


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 109 RGVNVQMTAERREWKRKISCAGPT*SGKVEKKKK 8
           +G++  + A  R+ +  I   GP    KV +KKK
Sbjct: 182 QGISTPVEAHLRKGRGAIGAYGPEKGPKVPEKKK 215


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 282 RPGDRLVHEPSARDGCLYRNDI*CM*LRDVW 190
           R G RL   PS R+G    +   C+ + D W
Sbjct: 28  RKGLRLHDNPSLREGLAGASTFRCVFVLDPW 58


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 183 TISIHLLVTCIIC 221
           +I + LL+TC+IC
Sbjct: 4   SILLSLLITCLIC 16


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 295 LW*PPAIVRGAC 330
           LW PPAI + +C
Sbjct: 134 LWTPPAIFKSSC 145


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 295 LW*PPAIVRGAC 330
           LW PPAI + +C
Sbjct: 140 LWVPPAIYQSSC 151


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 547  SGSIEHRWRCGTILQDKE 494
            SGS    W  GT+ Q K+
Sbjct: 1073 SGSSNGSWTAGTVSQQKQ 1090


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,525
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)