Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0749
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    31   0.86 
At2g30990.1 68415.m03780 expressed protein contains Pfam profile...    28   4.6  
At2g46940.1 68415.m05863 expressed protein                             27   8.0  

>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 269 RSPGLGSPGFGNPRQLFAGP 328
           ++P +G PGFG PR LF+ P
Sbjct: 127 QTPDIGMPGFGGPRALFSYP 146


>At2g30990.1 68415.m03780 expressed protein contains Pfam profile:
           PF05097 protein of unknown function (DUF688)
          Length = 573

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 524 PPVFNRTAQVREVGASPQEWFSKTQGSPTW 613
           PP  N  A ++ +G      F+KTQ +P W
Sbjct: 530 PPKNNSFAWLQSLGTDDDNHFTKTQANPKW 559


>At2g46940.1 68415.m05863 expressed protein 
          Length = 242

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 544 GSIEHRWRCGTILQDKEXSQRXGNXHKXTKQLNTSRKTVCRQMYHE 407
           GS E      + + D+E        H  T+Q + SR ++C   +HE
Sbjct: 2   GSEERMMISSSSVLDEEYEYTDDGFHYETRQNSLSRLSICTNSFHE 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,483,099
Number of Sequences: 28952
Number of extensions: 296837
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)