Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0748
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    27   0.18 
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    27   0.18 
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    27   0.18 
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    27   0.18 
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    27   0.18 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   4.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.2  

>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 275 NRWQASRQRXXAPYHRGXWSPDAAWRC 195
           NR++A +     P+H G W PDA+++C
Sbjct: 55  NRFEAPKP--VEPWH-GVWKPDASYKC 78


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 275 NRWQASRQRXXAPYHRGXWSPDAAWRC 195
           NR++A +     P+H G W PDA+++C
Sbjct: 55  NRFEAPKP--VEPWH-GVWKPDASYKC 78


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 275 NRWQASRQRXXAPYHRGXWSPDAAWRC 195
           NR++A +     P+H G W PDA+++C
Sbjct: 55  NRFEAPKP--VEPWH-GVWKPDASYKC 78


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 275 NRWQASRQRXXAPYHRGXWSPDAAWRC 195
           NR++A +     P+H G W PDA+++C
Sbjct: 55  NRFEAPKP--VEPWH-GVWKPDASYKC 78


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 275 NRWQASRQRXXAPYHRGXWSPDAAWRC 195
           NR++A +     P+H G W PDA+++C
Sbjct: 55  NRFEAPKP--VEPWH-GVWKPDASYKC 78


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 3   PSISPNSSLLKRYLP 47
           PSISP+   L ++LP
Sbjct: 202 PSISPSGGFLPKWLP 216


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 554  VIAKRARTDRPSQQLRHLNGE 616
            +   R    RPS QLR+ NG+
Sbjct: 1428 IAPNRVSQARPSVQLRYPNGK 1448


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 554  VIAKRARTDRPSQQLRHLNGE 616
            +   R    RPS QLR+ NG+
Sbjct: 1428 IAPNRVSQARPSVQLRYPNGK 1448


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,157
Number of Sequences: 336
Number of extensions: 2917
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)