Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0748
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    27   2.5  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   4.3  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   7.5  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   9.9  

>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 602 AATAGKGDRCA-PSSLLRQLAKGG 534
           A T GKG  CA  SS+L+Q+ K G
Sbjct: 85  AGTKGKGSTCAFTSSILQQIQKSG 108


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 654 ANFNKILTLTICHSPFRCRNCWEGRSVRALFAITPAGERGMC 529
           +NF    ++ +CH  FR     +G S++ L  ++P G  G C
Sbjct: 443 SNFFTWGSICLCHIIFRLAFKKQGHSLKELGFVSPMGIWGSC 484


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 460 FTGRRFTTS*LGKPWRSQLNRLAAHPPFASWRNSEEGAHRSPFPAVAAPEWRMAN 624
           F  R+F  + + +P   + N + A P +A  RNS+E   R+   + A  + RMA+
Sbjct: 183 FRLRKFANA-IDRPSFFRGNTMPALPSYAGVRNSQENEDRTEALSPALGKRRMAS 236


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 654 ANFNKILTLTICHSPFRCRNCWEGRSVRALFAITPAG 544
           +NF    ++ +CH  FR     +GRS+  L  ++P G
Sbjct: 447 SNFFSWGSINLCHIVFRLAMKKQGRSLDQLGFVSPMG 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,559
Number of Sequences: 5004
Number of extensions: 43429
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)