Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0748
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0695 - 26340161-26340804,26342057-26343429,26344074-263441...    36   0.029
04_04_0599 - 26516854-26517452,26517547-26517963,26518044-265183...    33   0.27 
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63...    31   0.63 
08_02_0797 + 21307534-21307639,21307907-21308988,21309385-213094...    30   1.9  
04_04_1320 - 32623378-32623949,32624035-32624451,32624548-326248...    28   5.9  
03_05_0198 + 21890523-21891002                                         28   7.8  
02_04_0141 + 20162276-20162285,20162460-20162726,20162734-201628...    28   7.8  

>11_06_0695 -
           26340161-26340804,26342057-26343429,26344074-26344173,
           26345230-26345362,26346857-26347258
          Length = 883

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 337 NNAAGPDTIVISAYGWXDDAVRGHHDGGPGTQF 435
           NNAAG   + ++ Y W  +A+ G  D GPG +F
Sbjct: 72  NNAAGVPRLGVAGYEWWSEALHGVSDTGPGVRF 104


>04_04_0599 -
           26516854-26517452,26517547-26517963,26518044-26518394,
           26518651-26518748,26518875-26518945,26519638-26520318
          Length = 738

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 301 IITVQMXHARPANNAAGPDTIVISAYGWXDDAVRGHHDGGPGTQFA 438
           ++T+    A+ +N AAG   + +  + W  +++ G  D GPG  F+
Sbjct: 57  LLTLDEKIAQLSNTAAGAPRLGVPPFEWWSESLHGVCDNGPGVNFS 102


>06_01_0078 -
           628946-629524,629620-629684,629814-629935,630042-630129,
           630508-630819,630908-632189,632296-632784
          Length = 978

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 49  RRGSGSGSHPARWWRNR*SSGARRVR--RHSHQXGRY 153
           RRG GSG+H  RW R      AR V   R  H  GR+
Sbjct: 66  RRGQGSGAHTPRWVRRTPDQMARYVEDDRAGHVYGRH 102


>08_02_0797 +
           21307534-21307639,21307907-21308988,21309385-21309432,
           21309705-21310217
          Length = 582

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -3

Query: 611 HSGAATAGKGDRCAPSSLLRQLAKGGCAARRLSWERQGFPSHDVVKRRP 465
           H G  + G+ DR     L+R LA      RR  W R G   H VV   P
Sbjct: 284 HGGHGSGGRSDRQLQGELVRYLA------RREEWRRWGGADHLVVPHHP 326


>04_04_1320 -
           32623378-32623949,32624035-32624451,32624548-32624895,
           32625671-32625768,32625882-32626051,32627134-32627418,
           32628041-32628119,32628481-32628623,32629227-32629634
          Length = 839

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 337 NNAAGPDTIVISAYGWXDDAVRGHHDGGPGTQFA 438
           N  A    + I AY W  +A+ G    GPGT+F+
Sbjct: 74  NKQAALPRLGIPAYEWWSEALHGVSYVGPGTRFS 107


>03_05_0198 + 21890523-21891002
          Length = 159

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +1

Query: 52  RGSGSGSHPARWWRNR*SSGAR-RVRRHSHQXGRYDAV-FHGSPDQSAYQQRQ 204
           RGSGS   PAR W      GAR R    S + G   A   HGS    A Q ++
Sbjct: 68  RGSGSAPVPARQWSGGGGGGARIRASSSSWREGAAAAAEGHGSAPVLARQGKE 120


>02_04_0141 +
           20162276-20162285,20162460-20162726,20162734-20162881,
           20163025-20163091,20163878-20163955,20164034-20164039
          Length = 191

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 502 WRSQLNRLAAHPPFASWRNSEEG 570
           WR  L      PP+  WR  EEG
Sbjct: 80  WRHYLPPTPLSPPYGKWRKEEEG 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,144,894
Number of Sequences: 37544
Number of extensions: 367275
Number of successful extensions: 1090
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)