Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0748
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    27   0.16 
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   4.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 22/79 (27%), Positives = 31/79 (39%)
 Frame = -1

Query: 268 GRLPVSEXPHLITVGXGRQTLLGAADTLIDLVSREKLRHIFLXGGCDGARGERHYFTDFA 89
           G L +    HL  +G  +Q   G A   I L+    +  +    GC GA  E H  T   
Sbjct: 25  GILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGSIIFVISFFGCCGAIRESHCMTITF 84

Query: 88  TSVPDDCLILTLACGKYRF 32
            S     L++ +A   Y F
Sbjct: 85  ASFLLFILLVQIAVAVYAF 103


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 5/23 (21%), Positives = 12/23 (52%)
 Frame = -2

Query: 411 VMTSNCIIXPTVGAYDDRIWTRS 343
           ++ S C+    +  +D  +W +S
Sbjct: 11  LLASRCVTKAAIAGHDGNLWAKS 33


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 491 SHDVVKRRPVNCNTTHYRANWVPGP 417
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 33  KRYLPQARVRIRQSSGTLVAKSVK 104
           +R   Q   R+RQ SGTL+ +  +
Sbjct: 255 RRQPVQLNERVRQVSGTLIIREAR 278


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
          protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 55 GSGSGSHPARWWRN 96
          G G+G +   WW+N
Sbjct: 14 GLGAGQNNKGWWKN 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,914
Number of Sequences: 438
Number of extensions: 3636
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)