Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0748
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49360.1 68418.m06108 glycosyl hydrolase family 3 protein           34   0.075
At1g02640.1 68414.m00214 glycosyl hydrolase family 3 protein sim...    30   1.2  
At3g19620.1 68416.m02487 glycosyl hydrolase family 3 protein sim...    30   1.6  
At1g78060.1 68414.m09096 glycosyl hydrolase family 3 protein sim...    30   1.6  
At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein bet...    29   2.1  
At2g13820.1 68415.m01526 protease inhibitor/seed storage/lipid t...    29   3.7  
At2g13820.2 68415.m01527 protease inhibitor/seed storage/lipid t...    28   6.5  

>At5g49360.1 68418.m06108 glycosyl hydrolase family 3 protein
          Length = 774

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 304 ITVQMXHARPANNAAGPDTIVISAYGWXDDAVRGHHDGGPGTQF 435
           +T+Q       NNAA    + I  Y W  +A+ G  D GPG +F
Sbjct: 67  LTLQEKIRNLVNNAAAVPRLGIGGYEWWSEALHGISDVGPGAKF 110


>At1g02640.1 68414.m00214 glycosyl hydrolase family 3 protein
           similar to beta-xylosidase GB:Z84377 GI:2102655 from
           [Aspergillus niger]
          Length = 768

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 337 NNAAGPDTIVISAYGWXDDAVRGHHDGGPGTQF 435
           N AA    + I  Y W  +A+ G  + GPGT+F
Sbjct: 73  NTAAAIPRLGIKGYEWWSEALHGVSNVGPGTKF 105


>At3g19620.1 68416.m02487 glycosyl hydrolase family 3 protein
           similar to beta-xylosidase A GB:BAA28267 from
           [Aspergillus oryzae]
          Length = 781

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 337 NNAAGPDTIVISAYGWXDDAVRGHHDGGPGTQF 435
           N A G   + +  Y W  +A+ G  D GPG  F
Sbjct: 70  NKATGVPRLGVPPYEWWSEALHGVSDVGPGVHF 102


>At1g78060.1 68414.m09096 glycosyl hydrolase family 3 protein
           similar to xylosidase GI:2102655 from [Aspergillus
           niger]
          Length = 767

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 274 LXLGXNRRXII---TVQMXHARPANNAAGPDTIVISAYGWXDDAVRGHHDGGPGTQF 435
           L +G   R ++   T+    ++  N A G   + + AY W  +A+ G    GPG +F
Sbjct: 43  LPIGKRARDLVSRLTIDEKISQLVNTAPGIPRLGVPAYEWWSEALHGVAYAGPGIRF 99


>At5g10560.1 68418.m01222 glycosyl hydrolase family 3 protein
           beta-xylosidase, Aspergllus nidulans, EMBL:ANXLND
          Length = 792

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 334 ANNAAGPDTIVISAYGWXDDAVRGHHDGGPGTQF 435
           +N AA    + I  Y W  +++ G  D GPG  F
Sbjct: 70  SNTAASVPRLGIPPYEWWSESLHGLADNGPGVSF 103


>At2g13820.1 68415.m01526 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 169

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 171 LTRSISVSAAPSSVWR-PXPTVIRCGXSLTGSLPSVXPGX*P 293
           LT  +S +A+  SV +   P   RCG S++G  P+  PG  P
Sbjct: 81  LTLDLSKAASLPSVCKVAAPPSARCGLSVSGDPPATAPGLSP 122


>At2g13820.2 68415.m01527 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 129

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 171 LTRSISVSAAPSSVWR-PXPTVIRCGXSLTGSLPSVXPG 284
           LT  +S +A+  SV +   P   RCG S++G  P+  PG
Sbjct: 81  LTLDLSKAASLPSVCKVAAPPSARCGLSVSGDPPATAPG 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,510,742
Number of Sequences: 28952
Number of extensions: 250390
Number of successful extensions: 585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)