Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0744
(696 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico... 54 4e-06
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=... 50 5e-05
UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recogniti... 50 7e-05
UniRef50_Q6L4B8 Cluster: Polyprotein, putative; n=1; Solanum dem... 47 5e-04
UniRef50_UPI00015B45BA Cluster: PREDICTED: similar to ENSANGP000... 37 0.41
UniRef50_Q4QGC7 Cluster: Putative uncharacterized protein; n=3; ... 36 0.72
UniRef50_UPI00015B614A Cluster: PREDICTED: similar to neprilysin... 36 0.95
UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu... 36 0.95
UniRef50_UPI00015A7780 Cluster: UPI00015A7780 related cluster; n... 36 1.3
UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:... 36 1.3
UniRef50_Q4TE65 Cluster: Chromosome undetermined SCAF5629, whole... 35 1.7
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea... 33 5.1
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr... 33 6.7
UniRef50_Q67MK8 Cluster: Putative uncharacterized protein; n=1; ... 33 6.7
UniRef50_A3EQ74 Cluster: Sensor protein; n=1; Leptospirillum sp.... 33 6.7
UniRef50_Q2HUG3 Cluster: Putative uncharacterized protein; n=1; ... 33 6.7
UniRef50_UPI0000D56584 Cluster: PREDICTED: similar to CG15072-PA... 33 8.8
UniRef50_UPI000011E462 Cluster: UPI000011E462 related cluster; n... 33 8.8
UniRef50_Q21802 Cluster: UPF0392 protein R07B7.12; n=2; Caenorha... 33 8.8
>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
eudicotyledons|Rep: Polyprotein, putative - Solanum
demissum (Wild potato)
Length = 868
Score = 53.6 bits (123), Expect = 4e-06
Identities = 27/63 (42%), Positives = 37/63 (58%)
Frame = -3
Query: 676 NRIRNESVRGSLKVAPVTEKLRSARLGWYGHVMRRNENEVVKRVLTMNVERFRERGDLRR 497
++IRNE +R + VA V +KLR ARL W+GHV RR+ + V+R M VE R +
Sbjct: 597 DKIRNEVIREKVGVASVVDKLREARLRWFGHVKRRSADAPVRRCEVMVVEGTRRGRGRPK 656
Query: 496 NGW 488
W
Sbjct: 657 KYW 659
>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
Papilionoideae|Rep: Reverse transcriptase family member
- Glycine max (Soybean)
Length = 377
Score = 50.0 bits (114), Expect = 5e-05
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = -3
Query: 676 NRIRNESVRGSLKVAPVTEKLRSARLGWYGHVMRRNENEVVKRVLTM-NVERFRERG 509
++IRNE++R + VAP+ EK+ RL W+GHV RR + V++RV M + R RG
Sbjct: 281 DKIRNEAIRERVGVAPIVEKMVENRLRWFGHVERRPVDSVLRRVDQMERRQTIRGRG 337
>UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF- hand; n=1; Medicago
truncatula|Rep: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand - Medicago
truncatula (Barrel medic)
Length = 559
Score = 49.6 bits (113), Expect = 7e-05
Identities = 31/103 (30%), Positives = 49/103 (47%)
Frame = -3
Query: 676 NRIRNESVRGSLKVAPVTEKLRSARLGWYGHVMRRNENEVVKRVLTMNVERFRERGDLRR 497
+RIRN+++R + VAP+ EKL RL W+GHV RR + + + NV + + RR
Sbjct: 323 DRIRNDTIRERVGVAPIVEKLVENRLRWFGHVERRPVKALYVKNIPENVTTEQLKELFRR 382
Query: 496 NGWIV*KTIWVGGE*AKKWYMIEEYGRRKHVAPTPGDWEKGRI 368
+G + + G K+ + Y R + EK I
Sbjct: 383 HGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEI 425
>UniRef50_Q6L4B8 Cluster: Polyprotein, putative; n=1; Solanum
demissum|Rep: Polyprotein, putative - Solanum demissum
(Wild potato)
Length = 115
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = -3
Query: 667 RNESVRGSLKVAPVTEKLRSARLGWYGHVMRRNENEVVKRVLTMNVERFRERGDLRRNGW 488
RNE R + A + +K R ARL W+GHVMRR+ V+R ++V R +N W
Sbjct: 53 RNEDFREKVGDASIVDKTRKARLRWFGHVMRRSTEAPVRRCERLDVVGKRRGSGRLKNYW 112
>UniRef50_UPI00015B45BA Cluster: PREDICTED: similar to
ENSANGP00000027469, partial; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to
ENSANGP00000027469, partial - Nasonia vitripennis
Length = 758
Score = 37.1 bits (82), Expect = 0.41
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 691 E*REWNRIRNESVRGSLKVAPVTEKLRSARLGWYGHVMRRNEN 563
E REW R+ N+ + + ++S RLGW GHV R ++
Sbjct: 572 ETREWRRLDNDELHNLYASPNINRIIKSRRLGWAGHVARMGDD 614
>UniRef50_Q4QGC7 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1753
Score = 36.3 bits (80), Expect = 0.72
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 408 CFLLPYSSIIYHFFA--HSPPTHIVFHTIHPFLLRSP 512
C L+PY SI +H HS H+V HT++ ++LR P
Sbjct: 1580 CSLIPYPSIFHHVDGSWHSYMWHLVVHTVYRYILRVP 1616
>UniRef50_UPI00015B614A Cluster: PREDICTED: similar to neprilysin-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
to neprilysin-like protein - Nasonia vitripennis
Length = 979
Score = 35.9 bits (79), Expect = 0.95
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 682 EWNRIRNESVRGSLKVAPVTEKLRSARLGWYGHVMRRNENEVVKRVL 542
EW R+ N+ + + ++S RLGW GHV R ++ V+
Sbjct: 867 EWRRLHNDKLHNLYASPNINRIIKSRRLGWAGHVERMGDDRTAACVM 913
>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
nubilalis|Rep: Reverse transcriptase - Ostrinia
nubilalis (European corn borer)
Length = 497
Score = 35.9 bits (79), Expect = 0.95
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 676 NRIRNESVRGSLKVAPVTEKLRSARLGWYGHVMRRNENEVVKRVL 542
+RIRNE +R +V + ++ + W GH+ RR + ++VL
Sbjct: 398 DRIRNEEIRRRTRVTDIARRIAKIKWQWAGHIARRADGRWGRKVL 442
>UniRef50_UPI00015A7780 Cluster: UPI00015A7780 related cluster; n=1;
Danio rerio|Rep: UPI00015A7780 UniRef100 entry - Danio
rerio
Length = 420
Score = 35.5 bits (78), Expect = 1.3
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 73 NFIHTHFN-HISCFKSYSIHLQFTFFVNVHKNTFLNIKCLCVV 198
+F H H H F ++H F F+ +H +TF+NI+C ++
Sbjct: 151 SFTHMHLLIHSFTFSIMNVHSFFHLFIYIHSHTFINIQCYSLI 193
>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
Ymf77 - Tetrahymena pigmentosa
Length = 1260
Score = 35.5 bits (78), Expect = 1.3
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +1
Query: 43 ISRNLNNILVNFIHTHFNHISCFKSYSIHLQFTFFVNVHKNTFLNIKCLCVVKFNSTN 216
++ N+N I+ N ++ + N+I+ K Y+I++ F N++ N + K + FNS N
Sbjct: 495 VNTNINKIIPNILNNYINNINIIKIYNIYILNKNF-NINNNNIIIKKINNNINFNSFN 551
>UniRef50_Q4TE65 Cluster: Chromosome undetermined SCAF5629, whole
genome shotgun sequence; n=3; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF5629,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 73
Score = 35.1 bits (77), Expect = 1.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 676 NRIRNESVRGSLKVAPVTEKLRSARLGWYGHVMR 575
+ I+ E +RG+ V +K+R RL W+GHV R
Sbjct: 36 DEIKKEYIRGTAHVRCFGDKVRETRLRWFGHVQR 69
>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase, partial; n=7;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase, partial -
Strongylocentrotus purpuratus
Length = 787
Score = 33.5 bits (73), Expect = 5.1
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 676 NRIRNESVRGSLKV-APVTEKLRSARLGWYGHVMRRNENEVVKRVLTMNVERFRERG 509
++IRNE +R L + + + E++ L W+GHV+R + + + + R RG
Sbjct: 421 DKIRNEEIRQRLNIPSTICEEITKRCLKWFGHVLRMPHHRLPYQAFQNDFNGRRPRG 477
>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
transcriptase-like; n=6; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to reverse
transcriptase-like - Strongylocentrotus purpuratus
Length = 415
Score = 33.1 bits (72), Expect = 6.7
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -3
Query: 619 KLRSARLGWYGHVMRRNENEVVKRVLTMNVERFRERGDLRRNGWIV*KTIWVG 461
K+ +LG++GH++R + + + +++ VE R+RG R+ W W G
Sbjct: 326 KVARLKLGYFGHILRGSGSPLAAQIIESQVEGKRKRGRQRKQ-WFDNIKEWTG 377
>UniRef50_Q67MK8 Cluster: Putative uncharacterized protein; n=1;
Symbiobacterium thermophilum|Rep: Putative
uncharacterized protein - Symbiobacterium thermophilum
Length = 297
Score = 33.1 bits (72), Expect = 6.7
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 468 HIVFHTIHPFLLRSPLSLNLSTFIVNTLLTTSFSFRLITCPYHPKRALLSFSVTGATFRL 647
H+V HT+ ++ + L + + LL ++ R++ HP ALL F++ + + L
Sbjct: 101 HMVQHTLLTMVMPPLILLGTPEWALRPLLRRPWAKRILRTLVHPVPALLLFNLIYSIWHL 160
Query: 648 PLTDSFRILFH 680
P+ +L+H
Sbjct: 161 PVLYQAILLYH 171
>UniRef50_A3EQ74 Cluster: Sensor protein; n=1; Leptospirillum sp.
Group II UBA|Rep: Sensor protein - Leptospirillum sp.
Group II UBA
Length = 751
Score = 33.1 bits (72), Expect = 6.7
Identities = 23/52 (44%), Positives = 28/52 (53%)
Frame = +3
Query: 498 LLRSPLSLNLSTFIVNTLLTTSFSFRLITCPYHPKRALLSFSVTGATFRLPL 653
LLRSPL L +S F+V TLLTT R T P H L+S + F + L
Sbjct: 13 LLRSPLVL-ISAFLVMTLLTTFLEMR--TPPAHYSSRLISHLIVIFLFNIDL 61
>UniRef50_Q2HUG3 Cluster: Putative uncharacterized protein; n=1;
Medicago truncatula|Rep: Putative uncharacterized
protein - Medicago truncatula (Barrel medic)
Length = 179
Score = 33.1 bits (72), Expect = 6.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +2
Query: 305 FILFENFKH*YNVSTSQHHHH-------YPALLPVTWGRRNMFSPSILFY 433
FI F+N +H Y++ TS+ HHH P+ P+T+ SP F+
Sbjct: 29 FIFFKNLEHSYSLITSRLHHHNRKSPPFSPSPTPLTYSHTPASSPQFSFF 78
>UniRef50_UPI0000D56584 Cluster: PREDICTED: similar to CG15072-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG15072-PA - Tribolium castaneum
Length = 1142
Score = 32.7 bits (71), Expect = 8.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 541 LTLS*QPHFHSVSSHVHTIPNVHSSASLSQVPLSD 645
LT S QP+F H+H I N+H+ SL+ P+S+
Sbjct: 814 LTSSFQPNFLHQPHHMHHILNIHNHRSLTNSPISN 848
>UniRef50_UPI000011E462 Cluster: UPI000011E462 related cluster; n=1;
unknown|Rep: UPI000011E462 UniRef100 entry - unknown
Length = 67
Score = 32.7 bits (71), Expect = 8.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 213 KLLMRNTLLFYKHYLKNLIYFEFILRFHL 299
K+L +TLLF+K + KN ++F RF L
Sbjct: 21 KILFFSTLLFFKAFEKNFVFFRLFFRFFL 49
>UniRef50_Q21802 Cluster: UPF0392 protein R07B7.12; n=2;
Caenorhabditis|Rep: UPF0392 protein R07B7.12 -
Caenorhabditis elegans
Length = 550
Score = 32.7 bits (71), Expect = 8.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 308 ILFENFKH*YNVSTSQHHHHYPALLPVTWGRRNMFSPSI 424
IL NF H Y+ S H + YP+ + +G+R++F I
Sbjct: 313 ILVPNFSHNYHQEFSSHFNAYPSYHSIFYGKRDVFVEKI 351
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,254,246
Number of Sequences: 1657284
Number of extensions: 11407080
Number of successful extensions: 30583
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 29155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30536
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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