Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0744
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    32   0.090
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    28   1.5  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   1.9  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.9  

>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -3

Query: 631 PVTEKLRSARLGWYGHVMRRNENEVVKRVLTMNVERFRER--GDLRRNGWIV 482
           P+T  L+S  LG +G  +++NE  + K  + + +E  R+    +L R  WI+
Sbjct: 306 PLTRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRKTWII 357


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 581 HMSIPSQTCTPQLLCHRCHFQTSSNGFI 664
           H  + S+ C P+LL H  +F     GFI
Sbjct: 273 HAHMNSEKCDPELLSHNEYFPMMKRGFI 300


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 465 THIVFHTIHPFLLRSPLSLNLSTFIVNTLLTTSFSFR 575
           T ++   I+P+++ S   L L+ F +  L+  +FSFR
Sbjct: 403 TVLLLTWINPYVINSHTGLILALFYLTNLIALAFSFR 439


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 402 ATCFLLPYSSIIYHFFAHSPPTHIVFHTIHPFLLRSPLSLNLSTF 536
           A CFLLP   IIY  F     T +  +     +L   +  +L+T+
Sbjct: 167 AVCFLLPVGVIIYTMFGGIKATFLTDYIHTVIILVILIMFSLATY 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,016
Number of Sequences: 5004
Number of extensions: 52761
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)