Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0744
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409...    30   1.5  
12_02_0056 + 12955832-12956410,12957398-12957499                       29   2.7  
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825...    29   3.5  
07_01_1111 + 10279778-10280065,10280265-10280340,10280734-102819...    29   4.7  
06_01_0031 - 305457-305663,306248-306523,306824-307609                 29   4.7  
02_05_0600 - 30273080-30274692,30274709-30274949                       29   4.7  
07_01_1085 + 9890369-9892114,9892213-9892731                           28   6.2  
07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371           28   6.2  

>12_01_1045 -
           10739396-10739402,10739968-10740239,10740361-10740941,
           10741566-10742586
          Length = 626

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 441 HFFAHSPPTHIVFHTIHPFLLRSPLSLNL 527
           HF A  P  H  FH  HP+++R P SL++
Sbjct: 366 HFAASFPLWHRKFHWRHPWIIRVPHSLSM 394


>12_02_0056 + 12955832-12956410,12957398-12957499
          Length = 226

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 442 WYMIEEYGRRKHVAPTPGDW 383
           W ++ + GRR+HV P  G+W
Sbjct: 25  WIVVLQKGRRRHVVPAFGEW 44


>03_06_0648 +
           35280492-35280645,35281742-35281820,35282491-35282593,
           35282695-35282815,35283144-35283232,35283324-35283473,
           35285842-35287161
          Length = 671

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 4   HEVFFFFFLTQPFISRNLNNILVNFIHTHFNH 99
           H V+  F + +PFI + +NNI   FI+    H
Sbjct: 512 HRVYGKFMVHRPFIRKAINNIFYQFIYETEKH 543


>07_01_1111 +
           10279778-10280065,10280265-10280340,10280734-10281944,
           10283779-10284138
          Length = 644

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 4   HEVFFFFFLTQPFISRNLNNILVNFIHTHFNH 99
           H ++  F + +PFI + +NNI   FI+    H
Sbjct: 371 HRIYGKFMVYRPFIRKAINNIFYQFIYETEKH 402


>06_01_0031 - 305457-305663,306248-306523,306824-307609
          Length = 422

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 378 FSQSPGVGATCFLL--PYSSIIYHFFA-HSPPTHIVFHTIHPFLLRSPLSLNLSTFIVNT 548
           F   P   ++C  L  P +S    FFA  SP     FH +HPFL   P S  L  F+++T
Sbjct: 16  FPFPPPSSSSCPFLSPPAASSTCPFFALDSPFAADPFH-LHPFLPTPPTSSLLDPFLLHT 74

Query: 549 L 551
           L
Sbjct: 75  L 75


>02_05_0600 - 30273080-30274692,30274709-30274949
          Length = 617

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 605 CTPQLLCHRCHFQTSSNGFIPDSIP 679
           CT  LLC RC   TSS   +P  +P
Sbjct: 493 CTAGLLCRRCWASTSSPTGLPSPLP 517


>07_01_1085 + 9890369-9892114,9892213-9892731
          Length = 754

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 597 PKRALLSFSVTGATFRLPLTDSFRI 671
           P  A+LSFSVT  TFRL  +  F++
Sbjct: 255 PHAAILSFSVTEETFRLVRSPPFQV 279


>07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371
          Length = 722

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 597 PKRALLSFSVTGATFRLPLTDSFRI 671
           P  A+LSFSVT  TFRL  +  F++
Sbjct: 255 PHAAILSFSVTEETFRLVRSPPFQV 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,583,385
Number of Sequences: 37544
Number of extensions: 290073
Number of successful extensions: 703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)