Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0744
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -3

Query: 610 SARLGWYGHVMRRNENEVVKRVLTMNVERFRERGDLRRNGWIV*KTIWV 464
           ++R+      M+ + ++  K +L+ +  R +ERG++   G  + KT W+
Sbjct: 548 ASRMEATSQAMQIHISQSTKELLSPSY-RVKERGEIEVKGKGIMKTYWL 595


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 341 VSTSQHHHHYPALLPVTWGRRNMFSPSILFYHIPFLRSLPSYPYR 475
           VS +   +H P ++ ++  R + FS   +  H+ FLR++P Y ++
Sbjct: 114 VSYTSGFYHIP-VIGIS-SRDSAFSDKNI--HVSFLRTVPPYSHQ 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,429
Number of Sequences: 438
Number of extensions: 3610
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)