Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0744
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26030.1 68416.m03242 serine/threonine protein phosphatase 2A... 30 1.3
At3g11380.1 68416.m01384 pentatricopeptide (PPR) repeat-containi... 30 1.3
At3g09880.1 68416.m01178 serine/threonine protein phosphatase 2A... 29 3.9
At3g26020.1 68416.m03241 serine/threonine protein phosphatase 2A... 28 5.1
At1g13460.2 68414.m01575 serine/threonine protein phosphatase 2A... 28 5.1
At1g13460.1 68414.m01574 serine/threonine protein phosphatase 2A... 28 5.1
At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo... 27 9.0
At4g15415.2 68417.m02357 serine/threonine protein phosphatase 2A... 27 9.0
At4g15415.1 68417.m02356 serine/threonine protein phosphatase 2A... 27 9.0
>At3g26030.1 68416.m03242 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B', putative similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 477
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 4 HEVFFFFFLTQPFISRNLNNILVNFIHTHFNH 99
H ++ F + +PFI + +NNIL +FI H
Sbjct: 222 HRIYGRFMVHRPFIRKTMNNILYDFIFETGKH 253
>At3g11380.1 68416.m01384 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 541
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -3
Query: 562 EVVKRVLTMNVERFRERGDLRRNGWIV*KTIWVGGE*AKKWYMIEEYGRRKHVAPTPG 389
E R+ M V +RE+G + + +V KT+W+ G ++EE ++ + PG
Sbjct: 323 EFDNRIPDMLVSGYREKGMVMKADKLVNKTLWIRGLATPITLLLEEMDKKGNKVSPPG 380
>At3g09880.1 68416.m01178 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B' (B'beta) identical to B'
regulatory subunit of PP2A [Arabidopsis thaliana]
GI:2160692; similar to SWISS-PROT:Q28653
serine/threonine protein phosphatase 2A, 56 kDa
regulatory subunit, delta isoform (PP2A, B subunit, B'
delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
cuniculus]; contains Pfam domain, PF01603: Protein
phosphatase 2A regulatory B subunit (B56 family)
Length = 499
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 4 HEVFFFFFLTQPFISRNLNNILVNFIHTHFNH 99
H ++ F + +PFI + +NNI FI+ H
Sbjct: 233 HRIYGKFMVHRPFIRKAINNIFYRFIYETERH 264
>At3g26020.1 68416.m03241 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B', putative similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 510
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 4 HEVFFFFFLTQPFISRNLNNILVNFIHTHFNH 99
H ++ F + +PFI +++NNI F+ H
Sbjct: 255 HRIYGKFMVHRPFIRKSINNIFYRFVFETEKH 286
>At1g13460.2 68414.m01575 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B', putative similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 492
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 4 HEVFFFFFLTQPFISRNLNNILVNFIHTHFNH 99
H ++ F + +PFI +++NNI F+ H
Sbjct: 234 HRIYGKFMVHRPFIRKSINNIFYRFVFETEKH 265
>At1g13460.1 68414.m01574 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B', putative similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 492
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 4 HEVFFFFFLTQPFISRNLNNILVNFIHTHFNH 99
H ++ F + +PFI +++NNI F+ H
Sbjct: 234 HRIYGKFMVHRPFIRKSINNIFYRFVFETEKH 265
>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985]
Length = 951
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 473 DMGRRGVSEEMVYDRRVWKEKTCCADPR*LGEGQDN 366
D G E D +K+CCA+P LG G D+
Sbjct: 762 DHSHSGCCETKQKDNVTVVKKSCCAEPVDLGHGHDS 797
>At4g15415.2 68417.m02357 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B' (B'gamma) identical to B'
regulatory subunit of PP2A [Arabidopsis thaliana]
GI:2160694; similar to SWISS-PROT:Q28653
serine/threonine protein phosphatase 2A, 56 kDa
regulatory subunit, delta isoform (PP2A, B subunit, B'
delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
cuniculus]; contains Pfam domain, PF01603: Protein
phosphatase 2A regulatory B subunit (B56 family)
Length = 522
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 4 HEVFFFFFLTQPFISRNLNNILVNFIHTHFNH 99
H ++ F + +PFI + +NNI FI H
Sbjct: 243 HRIYGKFMVHRPFIRKAINNIFYRFIFETEKH 274
>At4g15415.1 68417.m02356 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B' (B'gamma) identical to B'
regulatory subunit of PP2A [Arabidopsis thaliana]
GI:2160694; similar to SWISS-PROT:Q28653
serine/threonine protein phosphatase 2A, 56 kDa
regulatory subunit, delta isoform (PP2A, B subunit, B'
delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
cuniculus]; contains Pfam domain, PF01603: Protein
phosphatase 2A regulatory B subunit (B56 family)
Length = 522
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 4 HEVFFFFFLTQPFISRNLNNILVNFIHTHFNH 99
H ++ F + +PFI + +NNI FI H
Sbjct: 243 HRIYGKFMVHRPFIRKAINNIFYRFIFETEKH 274
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,273,854
Number of Sequences: 28952
Number of extensions: 254564
Number of successful extensions: 678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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