Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0743
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   3.4  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   4.5  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   4.5  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   5.9  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   5.9  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 156 RHTTTSRATCSLEGASGAKTGWKQCVAG-TKS-STSFRFKTEDEPTYT 19
           R+  T R++ S      A T  K+ V   T+S ST+F  KT D+PT T
Sbjct: 61  RYALTKRSSSSEYPRRSASTSAKKNVIPITRSYSTTFFSKTNDQPTVT 108


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -1

Query: 624 FR*FYSKKSNNVYCNN*PLTIYKHYKSVNSYGNNINNSKFLDIMYNTN 481
           F   YS      Y N   L+ Y       S  NN+NN+K  DI  ++N
Sbjct: 208 FEQVYSTDVAITYRNGQALSYYNGSVRQASMNNNVNNNKSKDIWSSSN 255


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 143 RRVPPAR*RELQVPRLVGNNASLVQNLQQA 54
           RRVP  R R  Q PRLVG    +  +L  A
Sbjct: 401 RRVPKIRFRTRQAPRLVGRRIVVAIDLWDA 430


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 609 SKKSNNVYCNN*PLTIYKHYKSV-NSYGNNINNSKFLDIMYNTNFC 475
           +K     Y NN  ++ Y+  K + NSYGN++ N    DI+ N +FC
Sbjct: 515 NKGGRENYLNN-RVSSYRLVKPILNSYGNHVLNRIQHDILEN-HFC 558


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 20  VYVGSSSVLKRKLVEDFVPATHCFQPVL 103
           VYVGS S L+++++ +     HC  P +
Sbjct: 95  VYVGSDSKLQKQILRELGVLHHCRSPYI 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,281
Number of Sequences: 5004
Number of extensions: 47282
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)