Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0743
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       29   3.6  
SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_27459| Best HMM Match : fn3 (HMM E-Value=1.4e-23)                   28   6.2  

>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = -1

Query: 189 QSSTDSISKL*RHTTTSRATCSLEGASGAKTGWKQCVAGTKSSTSFR---FKTEDEPTYT 19
           ++S  S+    RHT  +  T  +  A+   TGW  C A   + ++ +       D P + 
Sbjct: 511 ETSQGSVIGQARHTVAANGTLIITMATAGDTGWLTCTATNAAGSTVKKAYLTISDVPVFV 570

Query: 18  LVPGN 4
            +P +
Sbjct: 571 QLPSH 575


>SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 609 SKKSNNVYCNN*PLTIYKHYKSVNSYGNNINNSKFLDIMYNTNF 478
           S ++NN Y NN  +++  H  ++ S  N +N S   D   N NF
Sbjct: 118 SNRNNNDYYNNNKISLTFHDDNLLSTNNKVNTSIAKDNNNNNNF 161


>SB_27459| Best HMM Match : fn3 (HMM E-Value=1.4e-23)
          Length = 262

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 48  NESLLKILYQRRIVSNQSWHLKLPLT 125
           NE+ LK+LY+   ++NQ + L  PLT
Sbjct: 201 NENRLKLLYRPATINNQEFKLIAPLT 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,139,220
Number of Sequences: 59808
Number of extensions: 331915
Number of successful extensions: 723
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)