Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0743
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z93239-1|CAB07528.1|  512|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z66520-1|CAA91388.1|  655|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical
           protein C01G10.4 protein.
          Length = 72

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 615 FYSKKSNNVYCNN*PLTIYKHYKSVNSYGNNINNSKFLDIMYNTNF 478
           +Y   +NN Y NN   T Y +Y + N+ G   NN+ + +  YNT +
Sbjct: 23  YYYYPNNNNYNNNNGYTTYYYYPNNNNNGYYYNNNGY-NNGYNTYY 67


>Z93239-1|CAB07528.1|  512|Caenorhabditis elegans Hypothetical
           protein H03A11.1 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 296 LTNFHFIEYLIITISSVHFDVFNILNNV 213
           L + H ++YLI      HF+ FN+ N++
Sbjct: 352 LVDIHILDYLIGNQDRHHFESFNVFNDL 379


>Z66520-1|CAA91388.1|  655|Caenorhabditis elegans Hypothetical
           protein F49E12.1 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 308 SCIFSCVAIY*AVWIINCKC*FQILHVIFVFRLGDCKIN*LWIVK 442
           S +FS + IY    + + +C  + +H  F  + G+C++N  W+ K
Sbjct: 3   SLLFSILLIYLIQLVRSEECTDKHIHCFFWSQEGECEVNPRWMKK 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,928,313
Number of Sequences: 27780
Number of extensions: 262697
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)