Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0743
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03640.1 68417.m00499 hypothetical protein includes At2g05890...    30   1.7  
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    30   1.7  

>At4g03640.1 68417.m00499 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 394

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
 Frame = +3

Query: 159 TALICCPWKIVSSV-----PKFSD--VI*NVKDIKVNRRNCDNKILNEVKVSKCFVDRAF 317
           T L C  W+  + +      K +D  V+  ++  K+N  N +  + N   VS+ FVD   
Sbjct: 180 TRLACTLWRKYAEIVDQACQKSTDGIVVCLIRYAKINLYNDNRSVSNSFDVSQVFVDSTL 239

Query: 318 LVVLLFTKRFGL 353
             + LF +RF L
Sbjct: 240 AELSLFKERFWL 251


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 147 TTSRATCSLEGASGAKTGWKQCVAGTKSSTSFRFKTEDEPTYTLV 13
           +TS+ T  L    G+   W+  V G   S   +F+  +E +YT++
Sbjct: 590 STSKYTIDLPATEGSTLSWELRVLGADVSYGAQFEPSNEASYTVI 634


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,688,389
Number of Sequences: 28952
Number of extensions: 228182
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)