Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0739
         (601 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DA43ED Cluster: PREDICTED: similar to keratinocy...    35   1.7  
UniRef50_UPI00003613EE Cluster: Tumor necrosis factor receptor s...    33   6.8  

>UniRef50_UPI0000DA43ED Cluster: PREDICTED: similar to keratinocytes
           proline-rich protein; n=2; Rattus norvegicus|Rep:
           PREDICTED: similar to keratinocytes proline-rich protein
           - Rattus norvegicus
          Length = 541

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 86  PCTQARPVST*GSSGRRSEPRP---PVTAAAMDSAGRLARERNAPLVYASDHEH 238
           PC Q RP  T  +     +PRP   P   A+  + G   R R+ P + AS H H
Sbjct: 380 PCPQPRPTPTASTHAHGLDPRPRSRPTPTASTHAHGLDPRPRSRPTLTASTHAH 433


>UniRef50_UPI00003613EE Cluster: Tumor necrosis factor receptor
           superfamily member 4 precursor (OX40L receptor) (ACT35
           antigen) (TAX transcriptionally-activated glycoprotein 1
           receptor) (CD134 antigen).; n=1; Takifugu rubripes|Rep:
           Tumor necrosis factor receptor superfamily member 4
           precursor (OX40L receptor) (ACT35 antigen) (TAX
           transcriptionally-activated glycoprotein 1 receptor)
           (CD134 antigen). - Takifugu rubripes
          Length = 183

 Score = 32.7 bits (71), Expect = 6.8
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 86  PCTQARPVST*GSSGRRSEPRPPVTAAAMD-SAGRLARERNAPLVYASDHEHI*NLIKKA 262
           PCTQ RPVS    + R   P  PVT   ++ S G L  + + P+   SD E +   +++A
Sbjct: 117 PCTQCRPVS---PTTRPPPPVTPVTVITVETSKGYLLAKTHEPVSPCSDDEEVTKPVQEA 173


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,523,616
Number of Sequences: 1657284
Number of extensions: 11369274
Number of successful extensions: 23356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23347
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)