Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0739
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0871 - 11978725-11978986,11979265-11979422,11979501-119797...    30   1.6  

>03_02_0871 -
           11978725-11978986,11979265-11979422,11979501-11979705,
           11979797-11980086,11980539-11980692,11980793-11980881,
           11981567-11981634,11982082-11982352
          Length = 498

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = +2

Query: 86  PCTQARPVST*GSSGRRSEPRPPVTAAAMDSAGRLA 193
           P   ARP    G  G  S     VT AA D  GRLA
Sbjct: 48  PLLAARPSCLGGGGGSNSSASSAVTVAAADEVGRLA 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,894,345
Number of Sequences: 37544
Number of extensions: 318900
Number of successful extensions: 741
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)