Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0739
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36029| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_48509| Best HMM Match : DUF352 (HMM E-Value=2.4)                    28   6.6  
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   27   8.8  
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)               27   8.8  
SB_20684| Best HMM Match : zf-C2H2 (HMM E-Value=5.8)                   27   8.8  

>SB_36029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 24  TLQTPP*RSHINRIISKILNYRVLRRDQSRHEAPREGGV 140
           T  TP   SH    +++   YR +R + +RH A ++GGV
Sbjct: 12  TTSTPEVNSHAKSHVTETQEYRKIRTNSARHYA-QKGGV 49


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 428  YRGERPAVKYIIKQSILFANVKSLIYGF 511
            Y G  P V + I  ++ F N+K+L+Y +
Sbjct: 1787 YSGSNPHVLFDIGNNLTFTNLKTLVYNY 1814


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 295  QNGLCCNLASS*YTCTTLI**QTKICSKYNFIGNCMSPQC 414
            QNG  CN+  + Y C   +    K C   + + NC +  C
Sbjct: 2629 QNGGTCNVTDTGYKCECFVGYIGKECENVSSVDNCGNQTC 2668


>SB_48509| Best HMM Match : DUF352 (HMM E-Value=2.4)
          Length = 268

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 74  NFKLPCTQARPVST*GSSGRRSEPRPPVTAAAMDSAGRLAR 196
           N ++  ++ RP +   + GRR    PP+ AA +D + R  R
Sbjct: 67  NKQITASEDRPRTIATTDGRRESYLPPINAAGLDESVRRQR 107


>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 104 PVST*GSSGRRSEPRPPVTAAAMDSAGRLARERNAPL 214
           PVST GSS   + P PP   +A D++      + AP+
Sbjct: 468 PVSTNGSSPASASPTPPRFESANDASADPGATKQAPV 504


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 152  PVTAAAMDSAGRLARERNAPLVYASD 229
            P TA+ ++SAGR  R  N  ++Y  D
Sbjct: 2070 PATASRLNSAGRSRRNSNDLMIYGQD 2095


>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
          Length = 600

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 478 FRQCEISHLWLYPY*N-LEPD 537
           F  C++  +W+YPY N L PD
Sbjct: 399 FTSCKVRKMWVYPYTNELPPD 419


>SB_20684| Best HMM Match : zf-C2H2 (HMM E-Value=5.8)
          Length = 395

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 24  TLQTPP*RSHINRIISKILNYRVLRRDQSRHEAPREG 134
           T  TP   SH    +++   YR +R + +RH A + G
Sbjct: 359 TTSTPEVNSHAKSHVTETQEYRKIRTNSARHYAQKGG 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,946,422
Number of Sequences: 59808
Number of extensions: 352450
Number of successful extensions: 613
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)