Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0739
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.3  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 219 YTNGAFRSRASRPAESIAAAVTGGRG 142
           Y NG   +    PA  +AAA  GG G
Sbjct: 576 YRNGEVTTPLFTPAVGVAAASAGGAG 601


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 319 LNCNTVHFDSIFKYAVNKNSFFN 251
           L+  T+H ++ +KY  N N++ N
Sbjct: 85  LSNRTIHNNNNYKYNYNNNNYNN 107


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 319 LNCNTVHFDSIFKYAVNKNSFFN 251
           L+  T+H ++ +KY  N N++ N
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNN 107


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 319 LNCNTVHFDSIFKYAVNKNSFFN 251
           L+  T+H ++ +KY  N N++ N
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNN 107


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 319 LNCNTVHFDSIFKYAVNKNSFFN 251
           L+  T+H ++ +KY  N N++ N
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNN 107


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 319 LNCNTVHFDSIFKYAVNKNSFFN 251
           L+  T+H ++ +KY  N N++ N
Sbjct: 318 LSNKTIHNNNNYKYNYNNNNYNN 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,067
Number of Sequences: 438
Number of extensions: 3136
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)