Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0738
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    29   0.60 
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   4.2  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   5.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   5.6  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.8  

>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 379 AVSSFTHLSNKKSIYYITPKVIKTPLNRE 465
           +VSS + +S   S   +TP++ KT LNRE
Sbjct: 807 SVSSVSSISTYSSSIELTPQITKTSLNRE 835


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 382 VSSFTHLSNKKSIYYITPKVIKTPLNREIV 471
           V+SF H+  KK ++Y        PL +E +
Sbjct: 700 VASFLHVDPKKGLFYFDSTYRPCPLKQEFI 729


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 542 HKDTLSLFNVNNAS*CLDERRXX*TISRFNGVFITL 435
           ++DTLS FN++N      ER       R N  F+TL
Sbjct: 44  NRDTLSYFNISNLE--PSERSEWLPNKRVNAAFVTL 77


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 271  TAVVTVLETLELISQGVWRIYFVDVYVLQ*PLNT 372
            +A+ +VL+ +   +   W I F + Y++  PLNT
Sbjct: 966  SAIFSVLDDIVDFNHLTWSILFGENYIILKPLNT 999


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 271 FRPSNRTHY-CFTAEIGRVVVPTRLDSQVVLPQVNVIIMSITIIERYNLKKHVFERKKN 98
           FR +  + Y C   ++        +DS+++ P V  I  S + +    ++KH++ERK+N
Sbjct: 614 FRANGTSIYICENIDLNEPFKVLNVDSELI-PAVYPI--SDSFVNSATVEKHIWERKEN 669


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,052
Number of Sequences: 5004
Number of extensions: 40610
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)