Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0738
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918...    28   4.3  
06_01_0735 + 5431900-5432044,5432137-5432271,5432710-5432750,543...    27   10.0 

>02_04_0366 -
           22389591-22390527,22391296-22391429,22391762-22391816,
           22392364-22393225,22393342-22393459,22393647-22393737,
           22394627-22394670
          Length = 746

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 297 LRTYISRCVAHLLCRCLCAPVT 362
           LR Y++RC   ++  C C PVT
Sbjct: 371 LRVYVTRCALLIVQYCCCQPVT 392


>06_01_0735 +
           5431900-5432044,5432137-5432271,5432710-5432750,
           5433463-5433579,5433779-5433898,5433982-5434076,
           5434149-5434242,5434592-5434723,5435191-5435303,
           5435443-5435566,5435884-5436000,5436083-5436177,
           5436269-5436362,5436655-5436780,5436854-5436966,
           5437067-5437256,5437395-5437508,5437551-5437598
          Length = 670

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 150 VIDMIITFTCGRTTCESRRVGTTTLPIS 233
           V+D+I+   CG   C+ + + T+TL  S
Sbjct: 233 VLDLIVKDICGELVCQKQGLSTSTLASS 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,523,220
Number of Sequences: 37544
Number of extensions: 247380
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)