Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0738
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.47 
SB_51024| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-08)                 28   4.4  

>SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 297 LRTYISRCVAHLLCRCLCAPV 359
           LR  + RC+   LCRCLCA V
Sbjct: 9   LRQRLCRCLCRCLCRCLCADV 29


>SB_51024| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-08)
          Length = 342

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -2

Query: 304 VLRSQVQLQRLFRPSNRTHYCFTAEIGRVVVPTRLDSQVVLPQVNVIIMSITIIE 140
           V+ S +Q  R+ R S  T    + E+ +V+  T L  Q ++P V++ +MS  +++
Sbjct: 133 VMASCLQEIRIRRRSIHTTLLLSDELTKVLRITSLIIQYIIPAVSLTVMSFRVLK 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,055,659
Number of Sequences: 59808
Number of extensions: 310676
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)