Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0738
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    29   2.9  
Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protei...    27   6.8  
M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.     27   6.8  

>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -2

Query: 193 QVVLPQVNVIIMSITIIERYNLKKHVFERKKNSFTVL 83
           Q V  ++N +    TII RYN K H F R  N  T L
Sbjct: 134 QRVQEKMNEVYGGSTIITRYNNKLHRFTRLDNEITPL 170


>Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical
           protein R10E8.1 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 217 VVPTRLDSQVVLPQVNVIIMSITIIERYNLKKHVFERKKNSFTVL 83
           +V   L+  + LP+V + + SITI     LKKH    K     VL
Sbjct: 194 IVSAPLEHFLHLPEVTITMQSITIFNLKLLKKHFLGLKSEKKFVL 238


>U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protein
           14 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 269 PPFKPNALLLHGRNRQGGGTYPSGLTSGP 183
           PP +P      G N +GGG  PSGL   P
Sbjct: 281 PPGQPGPAGPPGENGKGGGQGPSGLPGPP 309


>M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 269 PPFKPNALLLHGRNRQGGGTYPSGLTSGP 183
           PP +P      G N +GGG  PSGL   P
Sbjct: 262 PPGQPGPAGPPGENGKGGGQGPSGLPGPP 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,936,833
Number of Sequences: 27780
Number of extensions: 231293
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)