Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0738
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   6.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.3  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 372 GVKWLLEHIDIYKVNAPH 319
           G +W+   I  YK+N  H
Sbjct: 63  GTRWIFSCIGYYKLNKIH 80


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 354 EHIDIYKVNAPHTLRYKF*GLKYSYN 277
           EH  +Y   APH    +F  + + Y+
Sbjct: 771 EHYALYTAMAPHATASEFDEMSFYYS 796


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 260 KPNALLLHGRNRQGGGTYPSGLT 192
           K NA+LL GR+++     P G T
Sbjct: 367 KENAMLLSGRSQKSTTGPPPGPT 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,931
Number of Sequences: 438
Number of extensions: 2728
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)