Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0737
         (585 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp. ...    66   6e-10
UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1; ...    41   0.019
UniRef50_A0D095 Cluster: Chromosome undetermined scaffold_33, wh...    33   6.6  
UniRef50_Q1IW01 Cluster: Putative uncharacterized protein; n=1; ...    32   8.7  

>UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp.
           SS|Rep: LacZ alpha peptide - Beggiatoa sp. SS
          Length = 73

 Score = 66.1 bits (154), Expect = 6e-10
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = -3

Query: 367 GFPRQALNRGLPLGFRFSALRHLDPKKLD 281
           GFPRQALNRGLPLGFRFSALRHLDPKKLD
Sbjct: 45  GFPRQALNRGLPLGFRFSALRHLDPKKLD 73



 Score = 37.1 bits (82), Expect = 0.30
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = -1

Query: 495 DAPCTGALSAAGVVVTRT 442
           DAPC+GALSAAGVVVTR+
Sbjct: 2   DAPCSGALSAAGVVVTRS 19


>UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 99

 Score = 41.1 bits (92), Expect = 0.019
 Identities = 19/25 (76%), Positives = 19/25 (76%)
 Frame = +3

Query: 510 GKCARNPYLFIF*IHSNYVSAHGTI 584
           GKCARNPYLFIF     YVSAH TI
Sbjct: 28  GKCARNPYLFIFLNTFKYVSAHETI 52


>UniRef50_A0D095 Cluster: Chromosome undetermined scaffold_33, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_33,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1173

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 155 VYSFDL*GILPISAYWLKNELI*QKFNANFNKILTLTI 42
           +++F L G L    +WLKN+    KF++ F ++L L +
Sbjct: 665 IFNFSLQGALSYIDFWLKNQHFDDKFSSTFTQLLLLAL 702


>UniRef50_Q1IW01 Cluster: Putative uncharacterized protein; n=1;
           Deinococcus geothermalis DSM 11300|Rep: Putative
           uncharacterized protein - Deinococcus geothermalis
           (strain DSM 11300)
          Length = 171

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 168 ECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGSRCRKA 314
           E  SS    S +++R +QR+       G  PL +PS  S  LG  CR+A
Sbjct: 32  EVLSSHSHSSGLQDRPVQRRSESPSRDGLLPLNKPSRESRLLGRACRQA 80


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,770,227
Number of Sequences: 1657284
Number of extensions: 11247934
Number of successful extensions: 23620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23612
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)