Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0737
         (585 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.4  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   4.4  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   4.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   5.8  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 162 RVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGS 299
           R+E  S+L+   T  +   Q +R K +   +  L  P P S+ L +
Sbjct: 283 RIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLST 328


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 162 RVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGS 299
           R+E  S+L+   T  +   Q +R K +   +  L  P P S+ L +
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLST 117


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 162 RVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGS 299
           R+E  S+L+   T  +   Q +R K +   +  L  P P S+ L +
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLST 117


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -2

Query: 362 SPSSSKSGAP 333
           SPSS+KSG+P
Sbjct: 74  SPSSTKSGSP 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,388
Number of Sequences: 336
Number of extensions: 2551
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)