Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0737
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z46267-2|CAC42301.1|  600|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF228712-1|AAF34798.1|   91|Caenorhabditis elegans molybdenum co...    29   3.2  
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AC006722-4|AAK68419.2|  279|Caenorhabditis elegans Hypothetical ...    27   7.4  
AC006645-9|AAF39841.2|  293|Caenorhabditis elegans Nematode asta...    27   7.4  
U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic glut...    27   9.8  
L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate recep...    27   9.8  

>Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical
           protein ZK970.6 protein.
          Length = 1122

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +1

Query: 487 GRVRWHFWGNVR--GTPICLFS-KYIQIMY 567
           GR  WHFW   R   TPIC FS +Y  + +
Sbjct: 452 GRSVWHFWDGTRPLDTPICGFSGRYCPVQF 481


>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical
           protein R134.1 protein.
          Length = 1140

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = +1

Query: 499 WHFWGNVR--GTPICLF 543
           WHFWG +R   TPIC F
Sbjct: 465 WHFWGGIRPLATPICGF 481


>Z46267-2|CAC42301.1|  600|Caenorhabditis elegans Hypothetical
           protein F49E2.1b protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 156 RDRVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPS 275
           RDR+ C  S EQ S + ++ +  ++A++ +   G   EP+
Sbjct: 343 RDRIRCGDSDEQLSEVIQKAVNNKKARHAVFRNGRSEEPA 382


>AF228712-1|AAF34798.1|   91|Caenorhabditis elegans molybdenum
           cofactor synthesis-step1 protein MOCS1A-B protein.
          Length = 91

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 156 RDRVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPS 275
           RDR+ C  S EQ S + ++ +  ++A++ +   G   EP+
Sbjct: 21  RDRIRCGDSDEQLSEVIQKAVNNKKARHAVFRNGRSEEPA 60


>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical
           protein ZK970.5 protein.
          Length = 1143

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = +1

Query: 499 WHFWGNVR--GTPICLF 543
           WHFWG  R   TP+C F
Sbjct: 465 WHFWGGTRPPDTPVCGF 481


>AC006722-4|AAK68419.2|  279|Caenorhabditis elegans Hypothetical
           protein Y19D10A.6 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 567 IHNLNVFRK*TNRGSAHISPKVP--PDAPCTGALSAAGVVVTR 445
           I N+N F K  N  S+ ++PKVP  P +  T A++      T+
Sbjct: 236 IININTFYKCKNLLSSKLAPKVPISPTSTSTTAITTTNTTTTK 278


>AC006645-9|AAF39841.2|  293|Caenorhabditis elegans Nematode astacin
           protease protein 2 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 567 IHNLNVFRK*TNRGSAHISPKVP--PDAPCTGALSAAGVVVTR 445
           I N+N F K  N  S+ ++PKVP  P +  T A++      T+
Sbjct: 250 IININTFYKCKNLLSSKLAPKVPISPTSTSTTAITTTNTTTTK 292


>U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic
           glutamate receptor subunitprotein.
          Length = 962

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -2

Query: 209 FFNSGLLFQTGTTLNPISVYSFDL*GILPISAYWLKNELI*QKFNANFNKILTLTICHSP 30
           +F      Q GT + P S+      G +  SA+W    +I   + AN    LTL    +P
Sbjct: 643 WFTLAAFMQQGTDILPRSIS-----GRIASSAWWFFTMIIVSSYTANLAAFLTLEKMQAP 697

Query: 29  LQ 24
           ++
Sbjct: 698 IE 699


>L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 1 protein.
          Length = 962

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -2

Query: 209 FFNSGLLFQTGTTLNPISVYSFDL*GILPISAYWLKNELI*QKFNANFNKILTLTICHSP 30
           +F      Q GT + P S+      G +  SA+W    +I   + AN    LTL    +P
Sbjct: 643 WFTLAAFMQQGTDILPRSIS-----GRIASSAWWFFTMIIVSSYTANLAAFLTLEKMQAP 697

Query: 29  LQ 24
           ++
Sbjct: 698 IE 699


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,918,613
Number of Sequences: 27780
Number of extensions: 260556
Number of successful extensions: 498
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)