Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0736
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5UN99 Cluster: Putative uncharacterized protein; n=1; ...    37   0.31 
UniRef50_Q74CW6 Cluster: Sensor protein; n=1; Geobacter sulfurre...    34   2.2  
UniRef50_Q8IE95 Cluster: Putative uncharacterized protein MAL13P...    33   3.9  
UniRef50_Q82ZU8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_A6FZD3 Cluster: Nitrite reductase; n=1; Plesiocystis pa...    33   6.7  
UniRef50_Q6LFI9 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q870V5 Cluster: Related to ribosomal protein L1; n=3; S...    33   6.7  

>UniRef50_A5UN99 Cluster: Putative uncharacterized protein; n=1;
           Methanobrevibacter smithii ATCC 35061|Rep: Putative
           uncharacterized protein - Methanobrevibacter smithii
           (strain PS / ATCC 35061 / DSM 861)
          Length = 306

 Score = 37.1 bits (82), Expect = 0.31
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 29  LQDMKLRNENGVKLNLDRIINKTDTDRVVSIRNYLVHRKLNANTKTF--NW 175
           LQ+  ++    + L  D+IINK D   VVS+   ++H KLN+ T+ F  NW
Sbjct: 207 LQEDLIQKNKEIAL-ADKIINKGDVGEVVSVDGKMLHVKLNSKTQAFDGNW 256


>UniRef50_Q74CW6 Cluster: Sensor protein; n=1; Geobacter
           sulfurreducens|Rep: Sensor protein - Geobacter
           sulfurreducens
          Length = 1112

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +2

Query: 137 HRKLNANTKTFNWIEPVDLNGLLEHSNRKSANIFGLLPTS*RHINQNYHDESTEGPEYFK 316
           + +L A ++T  W   +D+ GL  + +    ++FG LP       + Y    TEG E FK
Sbjct: 207 YNQLAAQSRTITW--EIDVTGLFTYVSPVVESVFGYLPNELVGAMRFYEIHPTEGRERFK 264

Query: 317 T 319
           T
Sbjct: 265 T 265


>UniRef50_Q8IE95 Cluster: Putative uncharacterized protein
            MAL13P1.122; n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL13P1.122 - Plasmodium
            falciparum (isolate 3D7)
          Length = 2548

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +2

Query: 68   LNLDRIINKTDTDRVVSIRN---YLVHRKLNANTKTFNWIEPVDLNGLLEHSNRKSANIF 238
            +N+D  INK   ++ +S+ N     + RK N +    + ++  D N L + SN KS   +
Sbjct: 1455 INVDEFINKNQNEKDISLENIDALCIKRKRNVSHPYNDTLD--DTNILKDISNNKS--YY 1510

Query: 239  GLLPTS*RHINQNYHDESTEGPEYF 313
              +    R+++ NY +E  +G E F
Sbjct: 1511 VNISKKKRNVSFNYKEEFMKGDEQF 1535


>UniRef50_Q82ZU8 Cluster: Putative uncharacterized protein; n=1;
           Enterococcus faecalis|Rep: Putative uncharacterized
           protein - Enterococcus faecalis (Streptococcus faecalis)
          Length = 82

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
 Frame = +2

Query: 2   LVYFLETV--ALQDMKLRNENGVKLNLDRIINKTDT---DRVVSIRNYLVHRKLNANTKT 166
           L++FL+ V  +LQ  K+  ENG K N D+I+    +   D++V+++ YLV +K+NA  + 
Sbjct: 20  LLFFLQEVFASLQREKIDYENGKK-NSDKILAYETSRCIDQMVTLQ-YLVSKKVNALAEM 77

Query: 167 FN 172
           FN
Sbjct: 78  FN 79


>UniRef50_A6FZD3 Cluster: Nitrite reductase; n=1; Plesiocystis
           pacifica SIR-1|Rep: Nitrite reductase - Plesiocystis
           pacifica SIR-1
          Length = 402

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +2

Query: 23  VALQDMKLRNENGVKLNLDRIINKTDTDRV-VSIRNYLVH 139
           VALQ +   NE G+ +N++ +INK + D + ++IR +L H
Sbjct: 126 VALQALDNANEFGIDVNINCVINKLNADHLDLNIRYFLEH 165


>UniRef50_Q6LFI9 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 2752

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +2

Query: 44   LRNENGVKLNLDRIINKTDTDRVVSIRN--YLVHRK-LNANTKTFNWIEPVDLNGLLEHS 214
            L   NG   NL+ + N ++   VV  +N  ++ +RK ++ NT  FN+   +D    +  +
Sbjct: 810  LATNNGGGYNLNNVNNMSNIYNVVDAKNGNHMNNRKDMSINTDCFNYTNSIDEMDDINEN 869

Query: 215  NRKSANIFGLLPTS*RHINQNY 280
            N+K  N F  L  S    + NY
Sbjct: 870  NKKKDN-FPFLNNSNIDSDNNY 890


>UniRef50_Q870V5 Cluster: Related to ribosomal protein L1; n=3;
           Sordariomycetes|Rep: Related to ribosomal protein L1 -
           Neurospora crassa
          Length = 303

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +3

Query: 330 NLEPSYRDRVSQDDVRKSHGFVRTAMSEL--T*KRLKSN 440
           NLE ++RD +  D+ R+ +G VR A+ +L  T K+L  N
Sbjct: 207 NLEATFRDMIGMDEYRERNGVVRMAVGQLGFTPKQLAEN 245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,772,604
Number of Sequences: 1657284
Number of extensions: 10679200
Number of successful extensions: 21141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21134
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)