Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0736
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   2.7  
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    25   6.3  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   6.3  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    25   8.4  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 8   YFLETVALQDMKLRNENGVKLNLDRIINKTDTDRVVSIRNYLVHRKLNANT-KTFNWIEP 184
           YF++++ L+      ++ ++ N +R I+ T+T  + SIR+ L+   +      + N I+P
Sbjct: 666 YFIDSLNLET----KDSVLESNWERFISSTETYELDSIRDSLIDCLIRLLCYSSNNAIDP 721

Query: 185 VDLNGLLEHSN 217
           V   G L+  N
Sbjct: 722 VSAPGNLDFDN 732


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 176 IEPVDLNGLLEHSNRKSAN 232
           IEP  L  +L+HS RKS N
Sbjct: 25  IEPAVLFSILDHSTRKSEN 43


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 146 LNANTKTFNWIEPVDLNGLLE--HSNRKSANIFGL 244
           L A TKTF   E +DLN + +  H N   A+++ L
Sbjct: 836 LRALTKTFKLDETIDLNEIAKNCHPNFTGADMYAL 870


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 20  TVALQDMKLRNENGVKLNLDRIINKTDTDRVVSIRNYLVHRKLNANTKTF 169
           +VA   ++  N +   LN+   +N  D  R+  IRN  +   +++   TF
Sbjct: 26  SVANTGIEASNTSENNLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTF 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,716
Number of Sequences: 5004
Number of extensions: 45554
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)