Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0736
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0025 + 12408933-12409464,12409590-12409686,12410121-124101...    31   0.92 
07_03_0747 - 21184839-21184939,21185078-21185338,21185445-21186903     29   2.1  
04_04_0160 - 23201184-23201222,23201406-23201561,23201856-23202887     29   2.8  
10_01_0105 + 1287423-1289924                                           27   8.6  

>12_02_0025 +
           12408933-12409464,12409590-12409686,12410121-12410127,
           12412339-12412465,12412907-12413136
          Length = 330

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 56  NGVKLNLDRIINKTDTDRVVSIRNYLVHRKLNANTKTFNWIEPVDLNGLL-EHSNRKSAN 232
           NG ++N D +    D D +  +  + +   + ++  TF+WI+   LNG   EH   K   
Sbjct: 248 NGAEINED-LEPPVDVDNICKLEIHAIANHIISSLSTFHWIKQGVLNGPRDEHHMEKPRT 306

Query: 233 IF 238
           +F
Sbjct: 307 VF 308


>07_03_0747 - 21184839-21184939,21185078-21185338,21185445-21186903
          Length = 606

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 516 LGAAEKWSNSGFTSRQHGPIGVCF 587
           +G A++WSNS   +   G IGVC+
Sbjct: 38  IGNAKRWSNSLLVNADAGEIGVCY 61


>04_04_0160 - 23201184-23201222,23201406-23201561,23201856-23202887
          Length = 408

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 29  LQDMKLR-NENGVKLNLDRIINKTDTDRVVSIRNYLVHRKLNANTKTFNWIEPVDLNGLL 205
           L  +++R +E+ V  N  R I +    R  ++  Y + R+      +F+W   V L  + 
Sbjct: 142 LDALRMRLDEDAVTTNFQRWIRRALWRRPATVDLYYLPRR------SFSWPPAVPLTPVT 195

Query: 206 EHSNRKSANIFGLLPT 253
             S  K+  IFGL PT
Sbjct: 196 AVSRLKTLRIFGLRPT 211


>10_01_0105 + 1287423-1289924
          Length = 833

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 140 RKLNANTKTFNWIEPVDLNGL--LEHSNRKSANIFGLLPTS*RHINQ 274
           R L+     FN   PV++  L  L++ N    NI GL+P S  H N+
Sbjct: 548 RILHLGHNMFNGDIPVNITHLTQLQYLNLADNNISGLIPLSLSHFNE 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,959,835
Number of Sequences: 37544
Number of extensions: 286065
Number of successful extensions: 523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)