Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0736
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21580.2 68416.m02722 expressed protein                             29   1.8  
At5g59130.1 68418.m07411 subtilase family protein contains simil...    27   7.2  
At4g11090.1 68417.m01801 expressed protein other hypothetical pr...    27   9.5  

>At3g21580.2 68416.m02722 expressed protein
          Length = 384

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 47  RNENGVKLNLDRIINKTDTDRVVSIRNYLVHRKLNANTKTFNWIEPVDLNGL 202
           RN    KL     +N+T +  + + R ++V   ++ + KT NW+  + + GL
Sbjct: 33  RNFTNPKLLFPLRLNETPSSSLAAKRVFIVRATVDGDGKTGNWVNRLPIPGL 84


>At5g59130.1 68418.m07411 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 732

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -1

Query: 229 GTLTIAMFEKTI*VYRLYPIECFCIGI*FSMNQIVSDGNDAIRISFVD-NPI*IKLHAVL 53
           GT+  A+    I VYR+   EC    I  + +  +SDG D I IS  D N    +   + 
Sbjct: 220 GTVRGAVPASRIAVYRVCAGECRDDAILSAFDDAISDGVDIITISIGDINVYPFEKDPIA 279

Query: 52  VTKFHVL 32
           +  FH +
Sbjct: 280 IGAFHAM 286


>At4g11090.1 68417.m01801 expressed protein other hypothetical
           proteins - Arabidopsis thaliana
          Length = 432

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
 Frame = +2

Query: 8   YFLETVALQDMKLRNENGVKLNLDRIINKTDTDRVVSIRNYLVHRKLNANTKTFNWIE-- 181
           + ++    +D    +   V+L+LD++ N T TD   S+ +Y +        KT  + E  
Sbjct: 204 FLVQADIFEDSNGVSSAAVQLHLDKLDN-TWTDLFPSL-DYAIISSGEWFLKTAVYHENA 261

Query: 182 -PVDLNGLLEHSNRKSANIFGLLPTS*RHINQNYHDESTEGPEYFKTLV 325
            PV  +G  E SN           TS RH+        T+G  +F+T +
Sbjct: 262 NPVGCHGCPESSNMTDLGFDYAYNTSLRHVMDFIAKSKTKGMIFFRTSI 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,164,206
Number of Sequences: 28952
Number of extensions: 233284
Number of successful extensions: 454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)