Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0733
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0P9E6 Cluster: ATP-dependent Clp protease ATP-binding ...    34   3.8  
UniRef50_Q5CTS9 Cluster: Putative uncharacterized protein; n=2; ...    34   3.8  
UniRef50_A1AWB3 Cluster: SH3, type 3 domain protein precursor; n...    33   6.7  
UniRef50_A0CWF4 Cluster: Chromosome undetermined scaffold_3, who...    33   8.8  

>UniRef50_Q0P9E6 Cluster: ATP-dependent Clp protease ATP-binding
           subunit; n=11; Campylobacter|Rep: ATP-dependent Clp
           protease ATP-binding subunit - Campylobacter jejuni
          Length = 709

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
 Frame = -1

Query: 486 HTSITCGSISLATT-LSTHVSSVFKSISTCSSMYTKQKLTNVVSKMIKVILK*-----SL 325
           H  +TC  +  A   LST    +F+  S       + +L N +S+  +VI +      S+
Sbjct: 23  HEFVTCEHVLFALLKLSTDFKDIFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISV 82

Query: 324 FXIYIYVQSTFNTVYTQLTFFL*AAIFEKKQYRGYVRFGNLLQKNKIQKWPAHVNSEPLE 145
               I + S       ++  FL   I + + Y  Y+   + +  NKIQ+   H N + L 
Sbjct: 83  VLDEILLSSKNKNNEIKIIDFLEKLIQDSRSYSSYLLKKHNINLNKIQELQNHENIQNLN 142

Query: 144 MRAAACVWLVENNKM 100
              +    L +N K+
Sbjct: 143 NHTSDLTLLAQNGKI 157


>UniRef50_Q5CTS9 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 1167

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 317 IXNNDYFKI-TFIILLTTLVNFCFVYIDEQVEIDLKTDETCVDNVVASEMD 466
           I NNDYFK+  + I+++ LV+     ID+  +I LK+++  +   + SE D
Sbjct: 565 IDNNDYFKLFLYYIVISNLVHSINSIIDKNEKIKLKSEKRSIMLSINSEQD 615


>UniRef50_A1AWB3 Cluster: SH3, type 3 domain protein precursor; n=2;
           sulfur-oxidizing symbionts|Rep: SH3, type 3 domain
           protein precursor - Ruthia magnifica subsp. Calyptogena
           magnifica
          Length = 216

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 350 IILLTTLVNF-CFVYIDEQVEIDLKTDETCVDNVVAS 457
           +ILL TL N   FVYI +QV+I ++ D+T   N++ S
Sbjct: 11  LILLCTLANARSFVYITDQVDIPMREDKTFGGNILRS 47


>UniRef50_A0CWF4 Cluster: Chromosome undetermined scaffold_3, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_3,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 403

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +2

Query: 260 KKKVNCVYTVLKVLCT*IYIXNNDYFKITFIILLTTLVNFCFVYIDEQVEIDLKTDE 430
           K K   +Y V  V+C  IY+ ++D  +++   ++ T+ N   +  D +  ++L+T+E
Sbjct: 256 KNKKKLIYQVGHVICESIYLESDDILRVSNQFMIITISNLSSIQEDYEY-VELRTEE 311


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,509,254
Number of Sequences: 1657284
Number of extensions: 11920452
Number of successful extensions: 30176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30168
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)