Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0733
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1051 - 22562840-22562971,22563474-22563576,22563701-225637...    29   4.7  

>10_08_1051 -
           22562840-22562971,22563474-22563576,22563701-22563768,
           22563896-22564053,22564706-22564895,22565162-22566205
          Length = 564

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 162 LHGPAIF-EFCFFATSFQNEHILDIAFSRK 248
           LHGPAI  EFC F T + N+   D AF+RK
Sbjct: 404 LHGPAIMKEFC-FVTGYLNDD--DDAFTRK 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,764,515
Number of Sequences: 37544
Number of extensions: 312314
Number of successful extensions: 896
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)