Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0733
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 29   3.6  
SB_2461| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_47342| Best HMM Match : VWA (HMM E-Value=0)                         28   8.3  

>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 353  ILLTTLVNFCFVYIDEQVEIDLKTDETCVDNVVASEMDPQVID 481
            +L   L+++CF + D+   ID+ TDE   D   A   D Q +D
Sbjct: 1552 VLEVDLLDWCFKHGDDDEIIDIWTDEAKQDRAFAEFFDDQEMD 1594


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 221 YPRYCFFSKMAAYKKKVNCVYTVLKVLCT*IYIXN 325
           Y R+  ++ +++Y     C+Y +L V C  I++ N
Sbjct: 301 YSRFTCYNVLSSYFSVTLCIYYILLVFCAVIFVYN 335


>SB_2461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 378 KLTNVVSKMIKVILK*S---LFXIYIYVQSTFNTVYTQLT 268
           K T+++S     ILK S   LF  Y++V   F T +TQ T
Sbjct: 25  KSTSIISSRTPCILKTSPAVLFTTYLFVAHLFTTAHTQRT 64


>SB_47342| Best HMM Match : VWA (HMM E-Value=0)
          Length = 483

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 35  PDTTPP-LSTRSQRRPTTIRYETILLFSTSQTHAAARISNGSEFTW--AGHF 181
           P + P  LST S RR TT R  TI   S   T      S  +EF W   GHF
Sbjct: 261 PTSRPTRLSTPSTRRKTTRRASTIPPTSRPITTGVETTSLITEFPWPSPGHF 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,863,005
Number of Sequences: 59808
Number of extensions: 376651
Number of successful extensions: 1080
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)