Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0733
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50016-5|CAC42349.1|  506|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z50016-4|CAC42348.1|  475|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z50016-3|CAC42347.1|  487|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL032655-1|CAA21726.1|  995|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF151643-1|AAD42385.1|  506|Caenorhabditis elegans ionotropic GA...    29   3.2  
AF151642-1|AAD42384.1|  475|Caenorhabditis elegans ionotropic GA...    29   3.2  
AF151641-1|AAD42383.1|  487|Caenorhabditis elegans ionotropic GA...    29   3.2  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      28   5.5  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U97002-8|AAB52265.2|  166|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z50016-5|CAC42349.1|  506|Caenorhabditis elegans Hypothetical
           protein T21C12.1e protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 236 FFSKMAAYKKKVNCVYTVLKVLCT*IYIXNNDYFKITFIILLTTLVNFCFVYI 394
           F+    A   +V    T +  + T I   NN   K++++  L   +NFCFV +
Sbjct: 275 FWLNREASPARVGLGVTTVLTMTTLITTTNNSMPKVSYVKGLDVFLNFCFVMV 327


>Z50016-4|CAC42348.1|  475|Caenorhabditis elegans Hypothetical
           protein T21C12.1d protein.
          Length = 475

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 236 FFSKMAAYKKKVNCVYTVLKVLCT*IYIXNNDYFKITFIILLTTLVNFCFVYI 394
           F+    A   +V    T +  + T I   NN   K++++  L   +NFCFV +
Sbjct: 275 FWLNREASPARVGLGVTTVLTMTTLITTTNNSMPKVSYVKGLDVFLNFCFVMV 327


>Z50016-3|CAC42347.1|  487|Caenorhabditis elegans Hypothetical
           protein T21C12.1c protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 236 FFSKMAAYKKKVNCVYTVLKVLCT*IYIXNNDYFKITFIILLTTLVNFCFVYI 394
           F+    A   +V    T +  + T I   NN   K++++  L   +NFCFV +
Sbjct: 275 FWLNREASPARVGLGVTTVLTMTTLITTTNNSMPKVSYVKGLDVFLNFCFVMV 327


>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
           protein T21C12.1a protein.
          Length = 1106

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 236 FFSKMAAYKKKVNCVYTVLKVLCT*IYIXNNDYFKITFIILLTTLVNFCFVYI 394
           F+    A   +V    T +  + T I   NN   K++++  L   +NFCFV +
Sbjct: 549 FWLNREASPARVGLGVTTVLTMTTLITTTNNSMPKVSYVKGLDVFLNFCFVMV 601


>AL032655-1|CAA21726.1|  995|Caenorhabditis elegans Hypothetical
           protein Y6B3B.3 protein.
          Length = 995

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 236 FFSKMAAYKKKVNCVYTVLKVLCT*IYIXNNDYFKITFIILLTTLVNF 379
           FF K+  +K+ ++ V   L+V+     + NN  F  TF  + TTL  F
Sbjct: 528 FFDKLKTFKEGLDPVSAALRVVSQLRKLKNNQAFFETFQKVTTTLTEF 575


>AF151643-1|AAD42385.1|  506|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49B.3 protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 236 FFSKMAAYKKKVNCVYTVLKVLCT*IYIXNNDYFKITFIILLTTLVNFCFVYI 394
           F+    A   +V    T +  + T I   NN   K++++  L   +NFCFV +
Sbjct: 275 FWLNREASPARVGLGVTTVLTMTTLITTTNNSMPKVSYVKGLDVFLNFCFVMV 327


>AF151642-1|AAD42384.1|  475|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49B.2 protein.
          Length = 475

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 236 FFSKMAAYKKKVNCVYTVLKVLCT*IYIXNNDYFKITFIILLTTLVNFCFVYI 394
           F+    A   +V    T +  + T I   NN   K++++  L   +NFCFV +
Sbjct: 275 FWLNREASPARVGLGVTTVLTMTTLITTTNNSMPKVSYVKGLDVFLNFCFVMV 327


>AF151641-1|AAD42383.1|  487|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49B.1 protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 236 FFSKMAAYKKKVNCVYTVLKVLCT*IYIXNNDYFKITFIILLTTLVNFCFVYI 394
           F+    A   +V    T +  + T I   NN   K++++  L   +NFCFV +
Sbjct: 275 FWLNREASPARVGLGVTTVLTMTTLITTTNNSMPKVSYVKGLDVFLNFCFVMV 327


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 223  ICSFWKLVAKKQNS 182
            +CSFWKLV K +NS
Sbjct: 1563 VCSFWKLVVKIENS 1576


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 223  ICSFWKLVAKKQNS 182
            +CSFWKLV K +NS
Sbjct: 1563 VCSFWKLVVKIENS 1576


>Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical
           protein C39E9.7 protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
 Frame = -1

Query: 468 GSISLATTLSTHVSSVFKSISTCSSMYTKQKLTNVVSKMIKVI--LK*SLFXIYIYVQST 295
           G   +++   T ++ +   +++CSS+Y  +KL N     ++    +      I+++    
Sbjct: 346 GHSEISSAYFTIIAPILNLVTSCSSVYLFEKLANGEQNKMRFFNTIAFGTCGIFLFTLGF 405

Query: 294 FNTV---YTQLTFFL*AAIFEKKQYRGYVRFGNL 202
           FN V   Y     ++ A+      Y G++R   L
Sbjct: 406 FNPVNHKYIVTVMYILASSLLGCSYAGHLRMNQL 439


>Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical
           protein F28C6.4b protein.
          Length = 689

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 351 IKVILK*SLFXIYIYVQSTFNTVYTQLTFFL*AAIFEKKQY 229
           I VIL  SLF +Y Y QS F+ +   ++ FL   +FE  Q+
Sbjct: 529 IIVILTCSLFWMYGYKQSKFHIILPMVSHFL--RLFELTQF 567


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -1

Query: 351 IKVILK*SLFXIYIYVQSTFNTVYTQLTFFL*AAIFEKKQY 229
           I VIL  SLF +Y Y QS F+ +   ++ FL   +FE  Q+
Sbjct: 529 IIVILTCSLFWMYGYKQSKFHIILPMVSHFL--RLFELTQF 567


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 223  ICSFWKLVAKKQNS 182
            +CSFWKLV K +NS
Sbjct: 1563 VCSFWKLVVKIENS 1576


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 185 ILFFCNKFPKRTYPRYCFFSKMAAYKKKVNCVYTVLKVLCT*IYIXNNDYFKITFIILLT 364
           IL F       T P Y +   +  +++KV        + C  + +   DYF  TFI+L  
Sbjct: 21  ILIFICIVSYSTLPFYIYVHNLNRHREKVEMGQNYFILFCFEVGLTVVDYFIATFILLF- 79

Query: 365 TLVNFCFVYIDEQ 403
            ++ F  ++I +Q
Sbjct: 80  -IILFYILHILQQ 91


>U97002-8|AAB52265.2|  166|Caenorhabditis elegans Hypothetical
           protein K09H11.6 protein.
          Length = 166

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = -1

Query: 462 ISLATTLSTHVSSVF---KSISTCSSMYTKQKLTNVVSKMIKVILK*SLFXIYIYVQSTF 292
           + L+ T   ++  V+   + I+   + Y +  +   +  +I  IL  ++F +Y+  ++TF
Sbjct: 59  VGLSATQMLNILIVYLMNRGITLQKAHYLQPFIICALLHLIICILLSAIFFLYVVTRATF 118

Query: 291 NTVYTQLTFF 262
            +V++ L FF
Sbjct: 119 YSVWSDLGFF 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,288,771
Number of Sequences: 27780
Number of extensions: 309082
Number of successful extensions: 816
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)