Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0733
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28630.1 68414.m03526 expressed protein ; expression supporte...    29   2.2  
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              29   2.9  
At5g64220.1 68418.m08067 calmodulin-binding protein similar to a...    28   5.1  
At4g32280.1 68417.m04592 auxin-responsive AUX/IAA family protein...    28   5.1  
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    28   5.1  
At2g36485.1 68415.m04478 expressed protein                             27   9.0  

>At1g28630.1 68414.m03526 expressed protein ; expression supported
           by MPSS
          Length = 321

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 497 NNSYIHQLLVDPFHLRPHCLHMF 429
           NN Y HQ L+DPF L  H    F
Sbjct: 245 NNGYAHQPLIDPFELPNHHQEQF 267


>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = -3

Query: 175 AGPCKFGTVGNASGGVRLAGRE*QNGFISDRSRPPLRPRAQRGGRIGPRSRTAD 14
           AG  ++G  G A G +R  G E   GF S    P  RP    GG   P S T D
Sbjct: 257 AGSDRYGG-GRAGGPIRGGGEE-GRGFRSRAGAPYERPSRSGGGGAYPSSSTFD 308


>At5g64220.1 68418.m08067 calmodulin-binding protein similar to anther
            ethylene-upregulated calmodulin-binding protein ER1
            GI:11612392 from[Nicotiana tabacum]
          Length = 1050

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 255  AAIFEKKQYRGYVRFGN-LLQKNKIQKWPAHVNSEPLEMRAAACVWLV 115
            AA+  +K+YRG+ +    LL + +I K  AHV    +  +  A +W V
Sbjct: 873  AAVQIQKKYRGWKKRKEFLLIRQRIVKIQAHVRGHQVRKQYRAIIWSV 920


>At4g32280.1 68417.m04592 auxin-responsive AUX/IAA family protein
           contains Pfam profile: PF02309: AUX/IAA family
          Length = 251

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/58 (37%), Positives = 32/58 (55%)
 Frame = -1

Query: 447 TLSTHVSSVFKSISTCSSMYTKQKLTNVVSKMIKVILK*SLFXIYIYVQSTFNTVYTQ 274
           T +T  SS   SIS+ SSMY K K+  V     KV +K  LF  Y  + ++  T++T+
Sbjct: 142 TTATVGSSSSSSISSRSSMYVKVKMDGVAIAR-KVDIK--LFNSYESLTNSLITMFTE 196


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
           protein (ROS1) similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 240 KKQYRGYVRFGNLLQKNKIQKWPAHVNS 157
           KK+  G+ RF NL   NK+ + P H+ S
Sbjct: 383 KKKTTGHARFRNLSSMNKLVEVPEHLTS 410


>At2g36485.1 68415.m04478 expressed protein
          Length = 158

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 154 TVGNASGGVRLAGRE*QNGFISDRSRPPLRPR 59
           TV  AS   R++GRE ++  +SD SR   +P+
Sbjct: 50  TVPPASSRFRVSGRETESSIVSDPSREAYQPQ 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,864,502
Number of Sequences: 28952
Number of extensions: 263183
Number of successful extensions: 614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)