Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0732
         (574 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54I48 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q6MNK5 Cluster: COG2356 Endonuclease I precursor; n=2; ...    33   6.3  

>UniRef50_Q54I48 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 628

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +2

Query: 206 NTV*SQNLLI*QESVLRFKHVIFLILVHLCNIFILFL 316
           NT+ SQ L++ ++++L  K VIF+IL  +C IF L L
Sbjct: 264 NTIPSQRLVMQEKNILALK-VIFIILCVVCGIFALIL 299


>UniRef50_Q6MNK5 Cluster: COG2356 Endonuclease I precursor; n=2;
           Bdellovibrio bacteriovorus|Rep: COG2356 Endonuclease I
           precursor - Bdellovibrio bacteriovorus
          Length = 297

 Score = 32.7 bits (71), Expect = 6.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 29  PGAIXNTT*IRAQHTLTKSFWTRRFTKKKQK 121
           PG+I N T I  +HT  +S +TRRF    QK
Sbjct: 141 PGSIPNNTVINVEHTWPQSHFTRRFPDDVQK 171


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,951,544
Number of Sequences: 1657284
Number of extensions: 8461893
Number of successful extensions: 17592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17589
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)