Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0732
         (574 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    25   0.61 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   1.8  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   5.6  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 141 CKRNFEFIYVKLIH*HIVFSALILYSL 221
           CK+  E   ++LI+  +VF+A+ LY L
Sbjct: 317 CKKKLENYSLQLINHRVVFTAMGLYVL 343


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 461 GWIFKNDGPALFKLQFRKYFWENC 532
           G + KN G    +   R   WENC
Sbjct: 143 GSVIKNQGMPTMEAIARSGIWENC 166


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 414 LVVVFFCSLMLL 379
           LVV FFCSL+ L
Sbjct: 253 LVVQFFCSLVAL 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,061
Number of Sequences: 336
Number of extensions: 2414
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)