Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0732
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0098 + 11720417-11720806,11722151-11722348,11723088-117232...    28   4.6  

>06_02_0098 +
           11720417-11720806,11722151-11722348,11723088-11723210,
           11723288-11723499,11723580-11723851,11723931-11724199,
           11724976-11724990
          Length = 492

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 510 RNWSLNNAGPSFLNIHPGNFS 448
           R W+ ++ GP  L I PG FS
Sbjct: 105 RTWAFSDGGPGALQISPGRFS 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,140
Number of Sequences: 37544
Number of extensions: 204232
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)