Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0732
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_12836| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = -2

Query: 279 IKNITCLNLKTLSCQIS 229
           +K+++CLNLKT SCQ+S
Sbjct: 781 LKSLSCLNLKTYSCQLS 797


>SB_12836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 537 KLQFSQKYFRNWSLNNAGPSFLNIHPGNFS 448
           K + +  Y+  WS N  G S + +HPG  S
Sbjct: 107 KKEDNSGYYGYWSANKLGRSTMGLHPGRVS 136


>SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 62  AQHTLTKSFWTRRFTKKKQKRHE 130
           A HT+TK FWT  +TK K K H+
Sbjct: 97  ANHTITKRFWT--YTKSK-KTHD 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,079,563
Number of Sequences: 59808
Number of extensions: 249515
Number of successful extensions: 432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)