Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0732
         (574 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC150203-1|AAI50204.1|  816|Homo sapiens two pore segment channe...    31   2.9  
AY083666-1|AAM01199.1|  816|Homo sapiens two-pore channel 1 prot...    31   2.9  
AB032995-1|BAA86483.2|  857|Homo sapiens KIAA1169 protein protein.     31   2.9  

>BC150203-1|AAI50204.1|  816|Homo sapiens two pore segment channel 1
           protein.
          Length = 816

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 417 TSALLDQYLWRKNYLDGYSKMMARHYLNSNFGNIFGKIVTSF 542
           TS + D Y WR + +   + +   +Y  +NF NI    VT F
Sbjct: 600 TSTVADAYRWRNHTVGNRTVVEEGYYYLNNFDNILNSFVTLF 641


>AY083666-1|AAM01199.1|  816|Homo sapiens two-pore channel 1
           protein.
          Length = 816

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 417 TSALLDQYLWRKNYLDGYSKMMARHYLNSNFGNIFGKIVTSF 542
           TS + D Y WR + +   + +   +Y  +NF NI    VT F
Sbjct: 600 TSTVADAYRWRNHTVGNRTVVEEGYYYLNNFDNILNSFVTLF 641


>AB032995-1|BAA86483.2|  857|Homo sapiens KIAA1169 protein protein.
          Length = 857

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 417 TSALLDQYLWRKNYLDGYSKMMARHYLNSNFGNIFGKIVTSF 542
           TS + D Y WR + +   + +   +Y  +NF NI    VT F
Sbjct: 641 TSTVADAYRWRNHTVGNRTVVEEGYYYLNNFDNILNSFVTLF 682


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,372,499
Number of Sequences: 237096
Number of extensions: 1316660
Number of successful extensions: 1871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1871
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)